Pairwise Alignments

Query, 326 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Escherichia coli ECOR38

Subject, 306 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score =  351 bits (901), Expect = e-101
 Identities = 174/301 (57%), Positives = 220/301 (73%), Gaps = 1/301 (0%)

Query: 17  GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76
           GQRLDQ  A++F ++SRSR+  WI D R+ V+G V  +P++ V GG  + + AE E +  
Sbjct: 3   GQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVI-RPRDIVHGGAILELTAEQEAQGE 61

Query: 77  FEPQDIPLDIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 136
           +  QDI LDIVYED+DI+VINKP  LVVHP AG+ DGT+LNALLH+ P I +VPRAGIVH
Sbjct: 62  WVAQDIALDIVYEDEDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVH 121

Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKR 196
           RLDKDTTGLMVVAKT+ AQT+LV  LQ R ++R YE + IG +TAGG ++ PI RH  +R
Sbjct: 122 RLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQR 181

Query: 197 THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGR 256
             MAV   GK AV+HYR++E FR HT +R++LETGRTHQIRVHMAHI  PLVGDP YGGR
Sbjct: 182 QRMAVMEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHINFPLVGDPAYGGR 241

Query: 257 PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADF 316
            R P  AS+  + +L+ F RQALHA  L L HP +G  M W +P+P D V L+ +++ D 
Sbjct: 242 FRIPPAASQTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLTLLKQDR 301

Query: 317 E 317
           E
Sbjct: 302 E 302