Pairwise Alignments

Query, 373 a.a., hydrogenase formation protein HypD from Escherichia coli ECOR38

Subject, 386 a.a., Hydrogenase formation HypD protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  304 bits (778), Expect = 3e-87
 Identities = 156/342 (45%), Positives = 209/342 (61%), Gaps = 14/342 (4%)

Query: 36  RIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCT 95
           R ME CGGHTHAI ++GL  LLPE V  IHGPGCPVCVLP GRID  + +A+ PEVI C+
Sbjct: 34  RFMEFCGGHTHAIGRYGLAGLLPEAVTLIHGPGCPVCVLPAGRIDAALALAARPEVILCS 93

Query: 96  FGDAMRVPGK-QGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTT 154
           +GD  RVPG  + S++ A+A GAD+R+V SP+ A+ +A++NP R VVFF +GFETT P +
Sbjct: 94  YGDLFRVPGSARRSMISARAEGADIRMVTSPLQAVTIARDNPQRAVVFFAIGFETTAPAS 153

Query: 155 AITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNG-------IDAFLAPGHVSMVIG 207
           A  ++ + A  + NF+    H+   P + ++L +           +D  + PGHV+++ G
Sbjct: 154 AAAIKASLAAGLTNFHELVCHVLTPPAMAAILAEEATAATDVRPRLDGLIGPGHVALITG 213

Query: 208 TDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQ 267
              ++  A    RP+ VAGFEP DLLQ V+ LV       ++  N+Y R V +AGN  AQ
Sbjct: 214 MAPFDRFAQSNGRPIAVAGFEPTDLLQAVLALVTLTNEGAARAVNRYTRAVTEAGNTTAQ 273

Query: 268 QAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF---RPAPQQVCDDPRARCG 324
             + +VF V   +EWRGLG++  S + L P Y RFDAE  F    P PQ    +   RC 
Sbjct: 274 ALLNEVFEVKASAEWRGLGMVADSALALRPAYARFDAEKRFPCDLPPPQV---NRACRCP 330

Query: 325 EVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366
           ++L G   P  C LFG +C P    GA MVSSEGACAA Y Y
Sbjct: 331 DILRGLIAPEDCALFGRSCTPSDPVGACMVSSEGACAAAYAY 372