Pairwise Alignments

Query, 373 a.a., hydrogenase formation protein HypD from Escherichia coli ECOR38

Subject, 371 a.a., hydrogenase expression/formation protein HypD (RefSeq) from Shewanella loihica PV-4

 Score =  328 bits (842), Expect = 1e-94
 Identities = 152/362 (41%), Positives = 231/362 (63%), Gaps = 6/362 (1%)

Query: 7   YRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHG 66
           +R PE +  L + +   A+      E  + IMEVCGGHTH I K+GL+QLLP+N+EF+HG
Sbjct: 11  FRDPETIHNLAKEIALHAAK----HEGNIYIMEVCGGHTHTIMKYGLNQLLPDNIEFVHG 66

Query: 67  PGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPM 126
           PGCPVCV+P  RID    +AS P+VI  T GD +RVPG +GSL + +A+G D+R +Y PM
Sbjct: 67  PGCPVCVMPKERIDHAAILASQPDVILVTLGDMIRVPGSKGSLAEFRAKGCDIRPLYDPM 126

Query: 127 DALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLL 186
           DAL +A+ENP ++V+FF +GFET+ P TA+ ++QA+ + + N  F   H+ + P + +++
Sbjct: 127 DALTIAKENPDKQVIFFAIGFETSTPMTAVLIEQAEKQGIDNLLFHINHVLVPPAIDAVM 186

Query: 187 EQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVEQKIAA 246
             P   ++AF+ P HVS++ G   Y    + +  P+VV+GFEP+D+++ ++ +V+QK+  
Sbjct: 187 ADPQAKVNAFIGPAHVSVIAGAKLYRPAVTQYGTPVVVSGFEPVDVMESILRIVKQKVEG 246

Query: 247 HSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEA 306
            ++++ QY R V + GN+ AQQ +     V     WRGLG +  S + L P++   DAE 
Sbjct: 247 VAELDVQYSRAVSEEGNVHAQQKVNQYLTVRPHFRWRGLGPLNESALMLRPEFAHRDAEV 306

Query: 307 HFRPA--PQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWY 364
            +R       + D    +CG++L G  KP  C +FG  C P+T  G+ MVSSEGAC A+Y
Sbjct: 307 IYRDKLDVADIDDHKACQCGDILRGIAKPKDCKVFGRGCTPETPLGSCMVSSEGACNAYY 366

Query: 365 QY 366
           +Y
Sbjct: 367 RY 368