Pairwise Alignments

Query, 349 a.a., tRNA pseudouridine(13) synthase TruD from Escherichia coli ECOR38

Subject, 346 a.a., Uncharacterized conserved protein from Pseudomonas stutzeri RCH2

 Score =  203 bits (517), Expect = 5e-57
 Identities = 130/338 (38%), Positives = 176/338 (52%), Gaps = 13/338 (3%)

Query: 11  HGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHA 70
           HG+P G+ +LKA  EDF V E L     GEGEH+ + + K   NT   A  +A+   +  
Sbjct: 12  HGEPCGSAVLKAVAEDFQVDEVLDIPLSGEGEHLWLWVEKRNLNTEEAAKRIARAAGVPL 71

Query: 71  REVSFAGQKDKHAVTEQWLCARVPGKEIPDLSAFQLEGCQVLEYARHKRKLRLGALKGNA 130
           + +S+AG KD+ A+T QW    +PGK  PDL+A + +G  +L+  RH+RKL+ GA   N 
Sbjct: 72  KMISYAGLKDRQALTRQWFSLHLPGKADPDLAAAESDGLAILKRTRHQRKLQRGAHSANG 131

Query: 131 FTLVLREVSNRD-DVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRN 189
           F L LR +      ++ RL  I V GVPNYFG QRFG  G NL GA  +A        RN
Sbjct: 132 FRLRLRALQGEHAALDARLQRIKVNGVPNYFGLQRFGYDGGNLHGAREYAAKGELPVQRN 191

Query: 190 KRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVN 249
            RS  LSA RS LFN+++A R+     NQ   GD L      S+F A   E        N
Sbjct: 192 LRSRLLSAGRSYLFNKVLAARVADGSWNQARVGDLLAFTDSRSFFPAGAAE-------CN 244

Query: 250 DKELMITAALPGSGEWGTQ-----REALAFEQAAVAAETELQALLVREKVEAARRAMLLY 304
           D  L I    P    WG        E  A E A  A ++ L   L +  ++  RR + L 
Sbjct: 245 DPRLAILDLHPTGPLWGIDGSPAGDEIQALENAVAATDSALVNWLAQAGMKHERRILRLP 304

Query: 305 PQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTG 342
              LSW++ +   +++ F LP G FAT+VVREL++  G
Sbjct: 305 IGGLSWHYPEPDILQLEFVLPTGCFATAVVRELVSLAG 342