Pairwise Alignments

Query, 349 a.a., tRNA pseudouridine(13) synthase TruD from Escherichia coli ECOR38

Subject, 355 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  274 bits (700), Expect = 3e-78
 Identities = 158/333 (47%), Positives = 210/333 (63%), Gaps = 3/333 (0%)

Query: 7   LTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFL 66
           L YL+G+P+ +  L+    DF+V E L F P GEGEH ++ I K G NT  VA  L+ F 
Sbjct: 4   LHYLYGQPEASADLRTYNSDFIVQEILPFLPTGEGEHHMLHIRKEGLNTADVARMLSSFA 63

Query: 67  KIHAREVSFAGQKDKHAVTEQWLCARVPGKEIPDLSAFQLEGCQVLEYARHKRKLRLGAL 126
            +H +EV+FAGQKD+HA+TEQW   R+PGK +PD  +   E   VL  ARH +KLR GAL
Sbjct: 64  GVHPKEVTFAGQKDRHAITEQWFGVRIPGKSMPDWQSLNSEQLTVLSSARHGKKLRTGAL 123

Query: 127 KGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVR 186
            GN FTL LR VS+ D + +R+  I   GVPNYFG QRFG  G NL    +       V+
Sbjct: 124 AGNRFTLTLRAVSDMDALVRRIELIKATGVPNYFGEQRFGHDGKNLIFGRQMLSGKKKVK 183

Query: 187 DRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQR 246
           DRNKRS +LSA RS LFNQ+V+ERL+   + + +DGD + LAG  S+FVA   +   L  
Sbjct: 184 DRNKRSIYLSAVRSYLFNQVVSERLRLHQL-KTLDGDCVMLAGSKSYFVANPWD-ESLYG 241

Query: 247 RVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQ 306
           R+ + ++ ++A + G G   ++ EALAFEQ       E  A L +  +   RR +LL PQ
Sbjct: 242 RLAENDIQLSAPMWGRGLALSEAEALAFEQGVCGQYPEDLAGLEQAGLNQERRPLLLAPQ 301

Query: 307 QLSWNWWDDVTVEIRFWLPAGSFATSVVRELIN 339
           QLS+   +D T+ I+F LPAGSFATSV+REL+N
Sbjct: 302 QLSYEIQED-TLVIKFALPAGSFATSVLRELVN 333