Pairwise Alignments

Query, 349 a.a., tRNA pseudouridine(13) synthase TruD from Escherichia coli ECOR38

Subject, 349 a.a., pseudouridylate synthase from Marinobacter adhaerens HP15

 Score =  144 bits (363), Expect = 3e-39
 Identities = 110/350 (31%), Positives = 154/350 (44%), Gaps = 63/350 (18%)

Query: 17  TGLLKANPEDFVVVEDLGFEPD----------GEGEHILVRILKNGCNTRFVADALAKFL 66
           +G LK  P DF+V E L               G GEH+ +++ K G NT +VA  LA+  
Sbjct: 18  SGRLKTAPGDFIVDELLELPESSPAVEGEVIAGIGEHLCLKLEKVGDNTEYVARELARIA 77

Query: 67  KIHAREVSFAGQKDKHAVTEQWLCARVPGKEIPDLSAFQLEGCQ--VLEYARHKRKLRLG 124
                +V F G KD+HAVT QW     PG E  D +  +  G +  VL  +R  RKLR G
Sbjct: 78  GCRHFDVGFCGLKDRHAVTRQWFSLYRPGNEDQDTALIREIGLRWPVLAVSRQARKLRRG 137

Query: 125 ALKGNAFTLVLREVSNRDDVEQRLID-ICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNT 183
             +GN FT+ LR VS    V  R ++ +   G PNYFG QRFG  G+NL  A+       
Sbjct: 138 EHRGNGFTITLRAVSGEHQVIDRALERLGDIGAPNYFGPQRFGNDGANLDRAVHLDPATL 197

Query: 184 PVR----------------DRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQL 227
             R                D +K   + SAARS LFN+++A R+                
Sbjct: 198 NRRGRSGGKGRGGKKRAGSDGSKNVLYFSAARSWLFNEVLAARVDD-------------- 243

Query: 228 AGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQA 287
              GSW                  E   T  L G G          FE+  V    EL A
Sbjct: 244 ---GSW-----------------AEAGATGPLWGDGGTTASGPLETFERGIVEQTPELAA 283

Query: 288 LLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVREL 337
           L    +++  RR + + P+ LSW W  +  +E+ F+L  G +AT+++ ++
Sbjct: 284 LFSVTRMKPERRPLAVKPESLSWQWVAEDCLELAFFLSPGQYATTILSDI 333