Pairwise Alignments

Query, 1180 a.a., exodeoxyribonuclease V subunit beta from Escherichia coli ECOR38

Subject, 1223 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score =  737 bits (1903), Expect = 0.0
 Identities = 478/1210 (39%), Positives = 683/1210 (56%), Gaps = 64/1210 (5%)

Query: 6    ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65
            +TLDPL LPL G RLIEASAGTGKT+TIA LY+RLLLG    A    PL+ E++LVVTFT
Sbjct: 4    QTLDPLSLPLSGTRLIEASAGTGKTYTIAGLYVRLLLGDSQRA----PLSCEQILVVTFT 59

Query: 66   EAATAELRGRIRSNIHELRIACLRETTDNPLYKRLLEEIDDKA--QAAQWLLLAERQMDE 123
             AAT ELR RIR  I     A L    D+PL   L  E + +A  QA + L LA + +DE
Sbjct: 60   NAATQELRDRIRKKIQLAYRAFLGMEVDDPLINTLYSEAEPEARSQALKRLDLALKSLDE 119

Query: 124  AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183
            AA+FTIHGFCQR+L+  AFES +LFE +   D+S   + A  DFWR  CYPLP  +AQ++
Sbjct: 120  AAIFTIHGFCQRILSDMAFESSLLFESEFTLDDSEYLHHAVRDFWREACYPLPGYLAQII 179

Query: 184  FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243
               +  P  L + +   L      +   P     +A R +Q ++R+  +  + RDA  EL
Sbjct: 180  SNKFSDPDGLTKQLRPLLGANQASVSPTPEAFSQVAERLSQSLSRLRLIWPRERDATLEL 239

Query: 244  DALIESSGIDRRKFNRSNQA--KWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301
               +++  ++  +F + +Q   K     +A          LP++    +      +   G
Sbjct: 240  ---LKALPLNGTRFGKKDQGYPKLETLFAAMDNWAAQPLSLPDNKVLGALALGGLKLNKG 296

Query: 302  GETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRL 358
            GE+P   + PL   I+++     ++    +  A   I+   A +K+ +     DD+L  L
Sbjct: 297  GESPTPEQAPLLAHIERVTETIDTLVPSFLYGARDGIKARFAAQKQLKNLRTPDDLLIAL 356

Query: 359  DSALRSESGE--VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP-----ETALLL 411
              AL  E+ +   LA AI  RFP+A+IDEFQDTDP QY+IF  I+  Q      +  LL+
Sbjct: 357  ADALSEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQIFSSIYQGQQVSTDSDLGLLM 416

Query: 412  IGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471
            IGDPKQAIYAFRGADI TY+ AR +   HY+LDTN+RS+  M+ +VN+LFS++DD F+ +
Sbjct: 417  IGDPKQAIYAFRGADIHTYIHARGQTENHYSLDTNYRSSQAMIEAVNQLFSRSDDPFISQ 476

Query: 472  EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVG----DYQSTMAQVCAAQIR 527
             IPF  VK++ +    R V K     A+++ L+ GE    G      +S +A+  A +I 
Sbjct: 477  AIPFELVKASPEAAEKRLVEKVPQTSALRLKLL-GEDPNAGLNKASARSQLAEDAANEIA 535

Query: 528  DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSV 587
              L   QRGE L  +    +P++A DI+VLVR R EAA ++ AL+   I +V+LS RDSV
Sbjct: 536  RLLNEAQRGECLKQD----KPLKAKDIAVLVRDRNEAAYIKTALSSRGIGAVFLS-RDSV 590

Query: 588  FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDAVVEEFDG 647
            F+TL A+E+  +L A+  P+ E  LRSA+AT+++G +A  I   N DE      +E FD 
Sbjct: 591  FDTLVAKELALVLLAIANPKDERALRSAMATALLGYDAQAIHGFNLDEDVRQQQLEAFDN 650

Query: 648  YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHAL 707
              Q W KRG+MP + AL +   + E LL    G+RRLTD  H+ ELLQ+   +L+   AL
Sbjct: 651  LHQTWLKRGIMPCMMALAADTRLIERLLTADEGQRRLTDFRHLGELLQQKAMELDGISAL 710

Query: 708  VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT----NFRVQ 763
            + W  Q ++E  S   +Q +RLES+++LVQIVTIHKSKGLEYP+ +LPF++    + R  
Sbjct: 711  LNWYQQTLIEVSSTEEAQ-LRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLARDSRRKP 769

Query: 764  DQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRR 823
                YH++ +   V D++ + E     +AE LAEDLRLLYVALTR V  C   VA   R 
Sbjct: 770  APMLYHEQDAL--VWDIDQSEEGWAKYKAENLAEDLRLLYVALTRPVLACYCYVANHSRF 827

Query: 824  RGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTCIEALCDD----DIAWQTAQTGDNQPW 878
                   + + ++A+G LL  +    + A ++   +AL  +    D+    A   D  P 
Sbjct: 828  TKRDGISSQLFETAIGYLLGIETNACEFADIQAAAQALASEAISVDLVESDAPKLDFDPI 887

Query: 879  QVNDALTAELNARTLQRLPGDNWRVTSYSGL------QQRGHGIAQDLMPRLDVDAAGVV 932
               DA+  +L  R L R     WRV SYSGL      +Q   G+  +  P L+  A    
Sbjct: 888  DTADAV--KLAPRPLNRRHEIPWRVGSYSGLVKHSAHEQISPGMGDEAFPELEQLAP--- 942

Query: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVQEKLELGGFEPQWEPVL 990
               +   L+   F RGA+ G+FLH + E +DFT       + + + +E  G + +W+ +L
Sbjct: 943  ---DSEQLSRFSFERGANAGSFLHWVLEQIDFTLADTSLGDELPKAMERFGIDSEWQDML 999

Query: 991  TEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAGC 1050
              W   +L  PL+  G+ L  LS   K VEMEFY+PI + L A  L+ L+ Q+   +A  
Sbjct: 1000 HAWYLDLLHTPLDGDGLRLASLSQAQKLVEMEFYMPIGK-LDAPGLNQLLSQYGYSAA-- 1056

Query: 1051 PPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110
              L F  + GMLKGFIDL F ++G++Y+ DYKSN LG+  S Y + AM  A+  H YDLQ
Sbjct: 1057 --LNFETLEGMLKGFIDLTFEYQGKFYIADYKSNHLGDHLSHYEKPAMLRAIAGHHYDLQ 1114

Query: 1111 YQLYTLALHRYLRHRIADYDYERHFGGVIYLFLRGVDKEHPQQGIYATRPNAGLIDLMDE 1170
            Y +Y+LALHRYL+ R+  Y Y++H GG  YLFLRG+  + P  G+Y  +P   LI  +D 
Sbjct: 1115 YIIYSLALHRYLKLRLPGYQYDQHVGGCYYLFLRGMSADSPSTGVYYDKPPLALIQALDT 1174

Query: 1171 MFAGMTLEEA 1180
            + +     E+
Sbjct: 1175 LLSEAEASES 1184