Pairwise Alignments

Query, 372 a.a., hydrogenase 2 small subunit from Escherichia coli ECOR38

Subject, 317 a.a., hydrogenase (NiFe) small subunit HydA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  196 bits (497), Expect = 9e-55
 Identities = 115/309 (37%), Positives = 171/309 (55%), Gaps = 31/309 (10%)

Query: 13  INRRDFMKLCAALAATMGLSSKAAAEMAESVT---NPQRPPVIWIGAQECTGCTESLLRA 69
           +NRRDF+KLC    A  G+S      + E+++   N +RPPV+W+  Q CTGC+ SLL +
Sbjct: 3   LNRRDFVKLCTGTVAGFGISQMFHPAVCEAISGSLNGERPPVLWLQGQGCTGCSVSLLNS 62

Query: 70  THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129
            HPT+ +++L+ ISLE+H  + A  G    E+     E+YKG+Y +VV+G++P + +G Y
Sbjct: 63  VHPTIADVLLKVISLEFHPTVMAWEGEPAMEHMMKIAEQYKGKYFVVVEGAVPTEADGKY 122

Query: 130 CMVAGE------PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP-- 181
           C++ GE       +VD ++  A  AAA++A+G+C+A+GG+ AA  + TGA S+ +     
Sbjct: 123 CII-GEAHHKEISMVDAMKSVAANAAAVLAVGTCAAYGGIPAAQGSETGAKSVSQFFKDN 181

Query: 182 --GKTVINIPGCPPNPHNFLATVAHIITYGKP-----------PKLDDKNRPTFAYGRLI 228
                V+NIPGCPP+P   + TV   +   K              LD   RPT  YGR +
Sbjct: 182 GIATPVVNIPGCPPHPDWIVGTVVVALNAIKAKGLAAGLGDVVKLLDADGRPTPFYGRNV 241

Query: 229 HEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAI 288
           HE+C     +DAG+  + F     +EG C Y LGCKGP +   C + +    GGV     
Sbjct: 242 HENCPYLEAYDAGKMCETF---TKKEG-CRYDLGCKGPMSM--CDSFERKWNGGVNWCIS 295

Query: 289 GHPCYGCNE 297
              C GC E
Sbjct: 296 NAVCIGCVE 304