Pairwise Alignments

Query, 372 a.a., hydrogenase 2 small subunit from Escherichia coli ECOR38

Subject, 317 a.a., hydrogenase (NiFe) small subunit HydA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  278 bits (712), Expect = 1e-79
 Identities = 133/288 (46%), Positives = 180/288 (62%), Gaps = 5/288 (1%)

Query: 12  GINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATH 71
           G++RRDF+K C A+A TMG+    A E+A ++  P+RP V+++   ECTGC+ES+LRA  
Sbjct: 20  GVSRRDFLKFCTAIAVTMGMGPAFAPEVARALMGPRRPSVVYLHNAECTGCSESVLRAFE 79

Query: 72  PTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM 131
           P ++ L+L+T+SL+YHE + AA G   E     A+    G ++ VV+G IP   NGIY  
Sbjct: 80  PYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHG-FIAVVEGGIPTAANGIYGK 138

Query: 132 VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP--GKTVINIP 189
           VA   ++D   +    A A+IA G+C+ +GGV AA  NPTGA  + + L   G   INI 
Sbjct: 139 VANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIA 198

Query: 190 GCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGD 249
           GCPPNP+N + T+ + +     P+LD  NRPT  +G+ +HE C R PHFDAG FA  F  
Sbjct: 199 GCPPNPYNLVGTIVYYLKNKAAPELDSLNRPTMFFGQTVHEQCPRLPHFDAGEFAPSFES 258

Query: 250 EGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297
           E  R+GWCLY LGCKGP T  NC  ++F      WPV  GHPC GC+E
Sbjct: 259 EEARKGWCLYELGCKGPVTMNNCPKIKFNQTN--WPVDAGHPCIGCSE 304