Pairwise Alignments

Query, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli ECOR38

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  302 bits (774), Expect = 2e-86
 Identities = 160/375 (42%), Positives = 240/375 (64%), Gaps = 5/375 (1%)

Query: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
           +F  LGL APIL+A+ D GY+ PSPIQA+ IP +L+G+DV+  AQTG+GKTA F+LPLL+
Sbjct: 2   SFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLE 61

Query: 67  NLD--PELKAPQI--LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
            L   P  ++ Q+  LVL PTRELA Q+AE++T + +H+  +    ++GG     Q+  L
Sbjct: 62  LLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLP-LRSAVVFGGVGISPQISQL 120

Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
           ++G  I+V TPGRLLD  ++  +  S+L  LVLDEAD ML MGFI D++ I+A +P   Q
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242
             +FSAT  + IR + +  +  P E+ +    +T   + Q    V   +K+ ALV+ ++ 
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ 240

Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302
            D+   ++F RTK+    +A+ LE  G  +AA++G+ +Q  R + L   K G + +L+AT
Sbjct: 241 GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT 300

Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362
           D+AARGLD++++  VVN+D+P   E YVHRIGRTGRAG  G+A+  V + E +LL +IER
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER 360

Query: 363 TMKLTIPEVELPNAE 377
            +   +P  E+   E
Sbjct: 361 LIGKLLPRAEVEGFE 375