Pairwise Alignments
Query, 180 a.a., Uncharacterized protein YrdD from Escherichia coli ECOR38
Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis JJ
Score = 99.0 bits (245), Expect = 2e-25
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69
+ + CPKCG +L+I+ G +G F GC YP C Y L ++ K + G+ CP CG+
Sbjct: 679 KEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNGESNE---KEIVGK-CPKCGS 734
Query: 70 NLVLRQGRFGMFIGCSNYPECEHTELIDKPDE 101
+L R+GRFG FIGCSNYP+C HTE IDK E
Sbjct: 735 DLYKRKGRFGEFIGCSNYPKCRHTEKIDKKKE 766
Score = 75.9 bits (185), Expect = 2e-18
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 51/165 (30%)
Query: 17 KCGAELVI-RSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL---------------- 59
KCG +++I R+ F+GCS YP C+ PL +KVL
Sbjct: 597 KCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGR---IKVLNEVCEKCQNPVIGLDR 653
Query: 60 --------------------------EGQVCPACGANLVLRQGRFGMFIGCSNYPECEHT 93
E ++CP CG L++++G +G+F GC NYP+C++T
Sbjct: 654 IKICVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYT 713
Query: 94 ELID---KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ 135
E ++ E CP+C + L +R+ R+G+ F C YP+C+
Sbjct: 714 EKLNGESNEKEIVGKCPKCGS-DLYKRKGRFGE-FIGCSNYPKCR 756
Score = 46.6 bits (109), Expect = 1e-09
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 54/139 (38%)
Query: 64 CPACGANLVLRQGRFGMFIGCSNYPECEHT------------------------------ 93
C G +++R F+GCSNYP+CE T
Sbjct: 596 CKCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIK 655
Query: 94 ----------------ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137
+ I+K ++ CP+C L+ ++ YG F C+ YP+C++
Sbjct: 656 ICVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLI-KKGPYG-VFRGCENYPKCKYT 713
Query: 138 ------INFKPIAGECPEC 150
N K I G+CP+C
Sbjct: 714 EKLNGESNEKEIVGKCPKC 732