Pairwise Alignments

Query, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Escherichia coli ECOR38

Subject, 811 a.a., DNA gyrase subunit B from Sinorhizobium meliloti 1021

 Score =  900 bits (2327), Expect = 0.0
 Identities = 477/804 (59%), Positives = 594/804 (73%), Gaps = 11/804 (1%)

Query: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64
           Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDNAIDEALAGH   + VT++
Sbjct: 15  YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADIVTVTLN 74

Query: 65  ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124
            D SV+V D+GRGIPT IH EEGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSVVN
Sbjct: 75  PDGSVTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 134

Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVTEFE 183
           ALS  L+L I+R GKIH   + HGV   PL VTG+   +TGT V F PS +TF+N+ EFE
Sbjct: 135 ALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETGTEVTFTPSEQTFSNI-EFE 193

Query: 184 YEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241
           +  L  RLREL+FLNSGV I L DKR  D + +   Y+GG++AFV YL++ K P+     
Sbjct: 194 FGTLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAYLDRAKKPLVQKPV 253

Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301
               EKDGI VEVA+ WND + EN+ CFTNNIPQRDGGTH+AGFR A+TR + +Y D  G
Sbjct: 254 SIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGALTRQITSYADTSG 313

Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361
            +KK KVS TGDD REGL AV+SVKVPDPKFSSQTKDKLVSSEV+  VE  +NE L+ +L
Sbjct: 314 ITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSVWL 373

Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421
            E+P+DAKI+VGK+++AA AREAAR+ARE+TRRKGALD++ LPGKLADC ERDPA SEL+
Sbjct: 374 EEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLADCSERDPAKSELF 433

Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481
           LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG  IG+D
Sbjct: 434 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTSIGKD 493

Query: 482 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541
           E+N DKLRYH IIIMTDADVDG+HIRTLLLTFF+RQMPE++ERGH+YIAQPPLYKV +GK
Sbjct: 494 EFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKVARGK 553

Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY 601
             QY+KD++A++ Y IS+ L+ A+L   AS     G+ L +++++    + ++  +  RY
Sbjct: 554 SVQYLKDEKALEDYLISMGLEEASLEL-ASGEVRVGQDLREVINDALRLRSLMEGLHSRY 612

Query: 602 PKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNADQNL-F 660
            ++++++      L   +L+ E+   + + A V+   D     ++  ++    A+  L  
Sbjct: 613 NRSVVEQAAIAGAL-NVELNGERDEYQLIAAEVARRLDVIAEETERGWEAAVTAEGGLKL 671

Query: 661 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE 720
           E +VR    GV     LD   I   + R I  L  +L+ +      + R +  Q ++   
Sbjct: 672 ERMVR----GVKEAAVLDMALIGSSDARHIDQLKARLKEVYGAPPVLRRRDGTQEISGPR 727

Query: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780
             LD +    R+GL++QRYKGLGEMN EQLWETT+DP  R +L+V V DA  AD LF+ L
Sbjct: 728 ALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVTDATDADGLFSRL 787

Query: 781 MGDAVEPRRAFIEENALKAANIDI 804
           MGD VEPRR FI+ENAL  AN+DI
Sbjct: 788 MGDEVEPRRDFIQENALSVANLDI 811