Pairwise Alignments

Query, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Escherichia coli ECOR38

Subject, 802 a.a., DNA gyrase, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  845 bits (2184), Expect = 0.0
 Identities = 450/811 (55%), Positives = 571/811 (70%), Gaps = 23/811 (2%)

Query: 4   SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63
           +Y S SIKVLKGL+AVRKRPGMYIGDTDDG+GLHHMV+EVVDNAIDEALAG+C    V +
Sbjct: 5   AYTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDHSEVIL 64

Query: 64  HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123
           + D SV+V D+GRGIP  IH EEGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSVV
Sbjct: 65  NGDGSVTVCDNGRGIPVDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVV 124

Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVTEF 182
           NALS  L+L I R+GK H   +EHG   APL V G+  ++TGT + F  S   F  +T +
Sbjct: 125 NALSDWLDLRIWRDGKEHYVRFEHGEVVAPLKVVGDCGDRTGTEITFLASPAIFA-ITTY 183

Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240
           +Y  L  RLREL+FLNSGV + L DKR  + +   FHY+GGI+ FV YL+K+KT +H   
Sbjct: 184 DYATLEHRLRELAFLNSGVRLLLTDKRGTEPRTTKFHYDGGIEEFVRYLDKSKTVLHSPP 243

Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300
                E+DG+ VE++L+W D + E + CFTNNIPQRDGGTH+AGFR  +TRTLN+Y    
Sbjct: 244 VTAIGERDGMIVELSLEWTDSYHETVLCFTNNIPQRDGGTHMAGFRGGLTRTLNSYAQDS 303

Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360
           G  KK KV+ TGDD REGL  V+SVKVPDPKFSSQTK+KLVSSEV+  VE  + E L ++
Sbjct: 304 GLMKKEKVTLTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVEAVVVERLGQW 363

Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420
           L E+P +A+ ++GK+++AA AREAARRARE+TRRKGALD+A LPGKLADCQ RDPA SEL
Sbjct: 364 LEEHPQEARKIIGKVVEAAAAREAARRARELTRRKGALDMASLPGKLADCQNRDPAQSEL 423

Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480
           ++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSS E+ TLI ALG GIG+
Sbjct: 424 FIVEGDSAGGSAKQGRDRGYQAILPLRGKILNVERARFDKMLSSAEIGTLIAALGTGIGK 483

Query: 481 DEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540
           D+++  K RYH IIIMTDADVDGSHIRTLLLTFF+RQMPE+VE+G++YIAQPPLY+ K+G
Sbjct: 484 DDFDVGKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVVEKGYLYIAQPPLYRAKRG 543

Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600
             EQY+KDD  ++ Y +   LD  T++T A+   +AG  L  LV      +  I  M R+
Sbjct: 544 NSEQYLKDDRELEDYLLDTGLD-ETVYTTAAGVQMAGPDLRALVERARLARNAIAAMGRK 602

Query: 601 YPKAMLKELIYQPTLTETDLSDE-------QTVTRWVNALVSELNDKEQHGSQWKFDVHT 653
            P  +L++           ++D+         V R ++AL S L         W   +  
Sbjct: 603 VPWVLLEQAAVAGAFHTEIVNDDARASAAAADVARRIDALESPLE------RGWTGTLAA 656

Query: 654 NADQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERR 713
                +F+  +R    GV   + +D + I   E RR+ ++   LR   E+   +   +  
Sbjct: 657 GGGM-VFQRTLR----GVTETHVIDPQVIHSTEARRLDSMAAALREFYEQPGRLRIKDGD 711

Query: 714 QPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAA 773
           Q +      ++ ++   R+G++IQRYKGLGEMNPEQLWETT+DP  RR+L+V V     A
Sbjct: 712 QIIPGPMTLINAVMAAGRKGIAIQRYKGLGEMNPEQLWETTLDPNVRRLLQVKVNQVSDA 771

Query: 774 DQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
           + +F+TLMGD VEPRR FI++NAL   N+D+
Sbjct: 772 EDVFSTLMGDIVEPRRDFIQDNALNVQNLDV 802