Pairwise Alignments

Query, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Escherichia coli ECOR38

Subject, 805 a.a., DNA gyrase, B subunit (RefSeq) from Shewanella loihica PV-4

 Score = 1183 bits (3061), Expect = 0.0
 Identities = 577/803 (71%), Positives = 683/803 (85%), Gaps = 2/803 (0%)

Query: 3   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62
           NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN+IDEALAG+C ++I+T
Sbjct: 4   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNDVIIT 63

Query: 63  IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           IHAD SVSV+DDGRGIP  IHPEEGVSAA+VIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 64  IHADGSVSVKDDGRGIPVAIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123

Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182
           VNALS+KL+L I+R+GK++ Q Y  G P AP+A  G+   TGT +RFWPS ETF++ T F
Sbjct: 124 VNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDATNTGTEIRFWPSAETFSD-TLF 182

Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242
            ++ILAKR+RELSFLNSGV IRL D+RD K++ F YEGGI AFV+YLN NKTP++  IF+
Sbjct: 183 HFDILAKRVRELSFLNSGVGIRLIDERDNKDEFFKYEGGISAFVDYLNLNKTPVNKEIFH 242

Query: 243 FSTEK-DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301
           F  E+ DGI VEVA+QWNDGFQENI+CFTNNIPQRDGGTHLAGFRAA+TR LN+YMDKEG
Sbjct: 243 FVQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRNLNSYMDKEG 302

Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361
           ++KK K SATGDDAREGL AV+SVKVPDPKFSSQTKDKLVSSEVKSAVEQ M E L +YL
Sbjct: 303 FNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYL 362

Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421
           LENP +AK++VGKIIDAARAREAAR+AREMTRRKGALDL GLPGKLADCQE+DPALSE+Y
Sbjct: 363 LENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIY 422

Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481
           +VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD
Sbjct: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482

Query: 482 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541
           EY+PDK RYHNI+IMTDADVDGSHIRTLLLTFF+RQMPE++ERG+V+IAQPPLYKVKKGK
Sbjct: 483 EYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVFIAQPPLYKVKKGK 542

Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY 601
           QEQY+KDD A+ +Y  ++ALDG  +H +  APA++G  LEKLV +Y   + + +R+E+R+
Sbjct: 543 QEQYLKDDPALTEYLTNLALDGGEIHPSQDAPAMSGAPLEKLVYQYREVEAIFDRLEQRF 602

Query: 602 PKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNADQNLFE 661
           P  + + ++YQP L+   L+DE  V +W +  V+ L + E  G  +  +   + ++ ++ 
Sbjct: 603 PIMLTERMLYQPGLSNDILADEAKVKQWCDNYVAALTEAESGGFIFSAEAFLDPERQVYL 662

Query: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQ 721
           P V VR HG+DT Y   ++F+   +Y+R+  L E L GL+EE  +++RGER + ++SF  
Sbjct: 663 PKVTVRKHGIDTHYLFSYDFLQSSDYQRMTALAEALEGLIEEGGYVKRGERMKEISSFVD 722

Query: 722 ALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLM 781
           ALDWL+ +S+RGL IQRYKGLGEMNPEQLWETTMDPESRRML+VT++DAIAADQLFT LM
Sbjct: 723 ALDWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDAIAADQLFTCLM 782

Query: 782 GDAVEPRRAFIEENALKAANIDI 804
           GD VEPRR FIE NAL  AN+D+
Sbjct: 783 GDQVEPRRDFIESNALNVANLDV 805