Pairwise Alignments

Query, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Escherichia coli ECOR38

Subject, 830 a.a., DNA gyrase, B subunit from Dechlorosoma suillum PS

 Score =  937 bits (2423), Expect = 0.0
 Identities = 493/825 (59%), Positives = 599/825 (72%), Gaps = 35/825 (4%)

Query: 4   SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63
           +Y  SSI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEVVDN+IDEALAGHC +I VTI
Sbjct: 17  AYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDITVTI 76

Query: 64  HADNSVSVQDDGRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119
           HADNS+SV D+GRGIPTG+  ++      SAAE+ +T LHAGGKF+ NSYKVSGGLHGVG
Sbjct: 77  HADNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVG 136

Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMV 167
           VS VNALS+ L L I+R+GK H   +  GVP             +PL V G+T+K GT V
Sbjct: 137 VSCVNALSKWLRLTIRRDGKRHFIEFNRGVPVERVIEVRDGFEVSPLKVLGDTDKRGTEV 196

Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227
            F    E F  V EF YEILAKRLRELSFLN+GVSIRL D+R+GKE+ F + GG+++FVE
Sbjct: 197 HFLADDEIFGTV-EFHYEILAKRLRELSFLNNGVSIRLVDQRNGKEELFAFAGGVQSFVE 255

Query: 228 YLNKNKTPIHPNIFYFSTE-KDG-----IGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281
           Y+N+ K+ +HP+IFY + E K G     IGVEVA+QWND +QE + CFTNNIPQ DGGTH
Sbjct: 256 YINRTKSVLHPSIFYSAGEAKVGDTGVTIGVEVAMQWNDSYQEQVLCFTNNIPQSDGGTH 315

Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341
           L G RAAMTR +N Y+++   +KKAKV  TGDD REGL  V+SVK+PDPKF+SQTK KLV
Sbjct: 316 LTGLRAAMTRIINKYIEENEIAKKAKVEITGDDMREGLACVLSVKMPDPKFASQTKMKLV 375

Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401
           SSE + AVE+ +   L E+LLE P DAK + GKI++AARAR+AAR+AREMTRRKG LD  
Sbjct: 376 SSEARPAVEEVVAAKLTEFLLERPVDAKTICGKIVEAARARDAARKAREMTRRKGILDGV 435

Query: 402 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 461
           GLPGKLADCQE+DP   ELYLVEGDSAGGSAKQGR+RK QAILPLKGKILNVEKARFDK+
Sbjct: 436 GLPGKLADCQEKDPTQCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKL 495

Query: 462 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEI 521
           +SSQE+ATLITALG GIG+DEY P+KLRYH IIIMTDADVDG+HIRTLLLTFFYRQMPE+
Sbjct: 496 ISSQEIATLITALGTGIGKDEYKPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 555

Query: 522 VERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE 581
           VERGH+YIAQPPLYKVK GK E+Y+KDD    Q+ + +A++G  L   A A  ++G ALE
Sbjct: 556 VERGHIYIAQPPLYKVKHGKTERYLKDDHEYQQFLLQMAMEGTELLPRAGAEPISGAALE 615

Query: 582 KLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKE 641
            L  EY   + +INR+       +L  L++     E  L DE         L    +D  
Sbjct: 616 SLAREYLLAEAVINRLSNHINPEVLHALVHHN--LELKLDDEAAAKASAALLAKVSSD-- 671

Query: 642 QHGSQWKFDV--HTNADQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRG 699
                   DV  H N  Q  ++  +    HG      +D +F+  G+Y ++    E L G
Sbjct: 672 ------GIDVFAHYNEAQESWQVRMEKMHHGNRKVSSIDEDFLRSGDYLQLRKTAELLNG 725

Query: 700 LLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPES 759
           L      I+RGE++  VA F   + WL+ E  +G+S QRYKGLGEMNPEQLWETTMDP  
Sbjct: 726 LFGPGGLIQRGEKKMAVADFASTMTWLLNEVEKGISKQRYKGLGEMNPEQLWETTMDPNV 785

Query: 760 RRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
           RR+LRV + DAI AD++FTTLMG+ VEPRR FIE NAL+A NID+
Sbjct: 786 RRLLRVGIDDAIGADEVFTTLMGELVEPRRNFIESNALRAQNIDV 830