Pairwise Alignments

Query, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Escherichia coli ECOR38

Subject, 798 a.a., DNA gyrase, B subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  711 bits (1835), Expect = 0.0
 Identities = 392/806 (48%), Positives = 522/806 (64%), Gaps = 20/806 (2%)

Query: 4   SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63
           +Y + SI +L+GL AVRKRP MYIG TD   GLHH+V+EVVDN+IDEA+AG+C  I+V +
Sbjct: 8   TYTADSITILEGLAAVRKRPAMYIGSTD-ARGLHHLVYEVVDNSIDEAMAGYCSRIVVKL 66

Query: 64  HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123
           H DNSV+V D+GRGIP  +HP+EG  A EV+MT LHAGGKFD+++YKVSGGLHGVGVS V
Sbjct: 67  HLDNSVTVSDNGRGIPVDLHPKEGKPAVEVVMTKLHAGGKFDNDAYKVSGGLHGVGVSCV 126

Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183
           NALS+ LE+ ++R+GK HR  +  G  Q PL   GE+   GT V F P  E F  V ++ 
Sbjct: 127 NALSEWLEVTVRRDGKRHRMRFARGAVQGPLEFLGESANHGTTVHFKPDEEIFETV-QYS 185

Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243
           YE L KR  ELS+LN G+ I   D+R  +   F  +GGI+ FV+ LN  ++ IHP I   
Sbjct: 186 YETLRKRFEELSYLNKGLEIEFTDERSAETHVFRADGGIRQFVKDLNSGESGIHP-IIDG 244

Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE-GY 302
               DG+ V+ ALQ+N G++EN+  F NNI  ++GGTHLAGF+ A+TR +N Y+  +   
Sbjct: 245 EGVTDGVTVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTRAINGYIKGQPDL 304

Query: 303 SKKAKVSA-TGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361
            KK K +  +GDD REGL +VVSVK+P P+F  QTK KL +SE+   V   + + L  + 
Sbjct: 305 VKKMKGTVLSGDDVREGLTSVVSVKLPQPQFEGQTKTKLGNSEIAGLVAGIVYDKLNVHF 364

Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421
            ENP DA++++ K +DAARAR+AARRA+E+ RRKGAL    LPGKLADCQ +DPA SEL+
Sbjct: 365 GENPKDARLIIDKAVDAARARDAARRAKELVRRKGALSDNSLPGKLADCQSKDPAESELF 424

Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481
           +VEGDSAGGSAKQGR+   QAILPL+GKILN E+ RFDKML+++EV  LITA+G GIG D
Sbjct: 425 IVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALITAMGAGIGED 484

Query: 482 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541
           + + DKLRYH ++IMTDADVDG+HIRTLLLTFF+RQ  E+++RGH+YIAQPPLY+V   +
Sbjct: 485 DTDYDKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQYQELIDRGHLYIAQPPLYRVHSSR 544

Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY 601
            E++IKDD  ++ + +    +  T+ T  S  A  G  +  L+         +  +E   
Sbjct: 545 FEKFIKDDPELNAFLLERISNDITIRTE-SGCAFTGPDIVSLMKAIELVSAKVRDVEN-- 601

Query: 602 PKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNADQNLFE 661
              + +EL       +T +  +       N L   L D+    S      H + D++   
Sbjct: 602 -IGIARELFLAFIEYQTRIEPQWFTEEDPNGLRQWLGDRGYTVSA----EHEDTDEDSRT 656

Query: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLR---GLLEEDAFIERGERRQPVAS 718
            +V   T+G  T   +  EF     YR+       +R   G L     ++R         
Sbjct: 657 FVVFEDTNGHRT--RVGAEFFHSKMYRQAWDALADIRTRCGSLR--CTVDRKGETSDAED 712

Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778
                  ++ E+R+G++IQRYKGLGEMNPEQLW TTM+PE+R +LRVTV DA  A + F 
Sbjct: 713 IFDLFRLVLDEARKGINIQRYKGLGEMNPEQLWVTTMNPENRTLLRVTVDDAEEASEAFE 772

Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804
            LMGD VEPRR FIE NAL   ++DI
Sbjct: 773 QLMGDRVEPRREFIERNALSVQDLDI 798