Pairwise Alignments

Query, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Escherichia coli ECOR38

Subject, 805 a.a., DNA gyrase, B subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  874 bits (2257), Expect = 0.0
 Identities = 462/810 (57%), Positives = 586/810 (72%), Gaps = 19/810 (2%)

Query: 1   MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60
           ++  Y + SIKVLKGL+AVRKRPGMYIGDTDDG+GLHHMV+EVVDN IDEALAGH   + 
Sbjct: 7   VAEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVN 66

Query: 61  VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V IHAD+SVSV D+GRGIP G+H EEGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGV
Sbjct: 67  VKIHADSSVSVSDNGRGIPVGVHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGV 126

Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNV 179
           SVVNALS  LEL I R+GK H   +EHG     L V G+  ++TGT VRF  S  TF+N+
Sbjct: 127 SVVNALSDWLELRIWRDGKEHVARFEHGDTVKHLEVIGDAGDRTGTEVRFMASTGTFSNL 186

Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEYLNKNKTPIH 237
            ++ ++ L  RLREL+FLNSGV I L D+R  +       YEGG++ FV YL+++KT   
Sbjct: 187 -DYSFKTLENRLRELAFLNSGVRIILEDERPAEPLRSELFYEGGVREFVRYLDRSKTSAM 245

Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297
               + + E+D IG+EVA+ WND + E +  FTNNIPQRDGGTHLAGFR A+TRT+NAY 
Sbjct: 246 EEPIFITGERDDIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTINAYA 305

Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357
              G +K+ KV+ TGDDAREGL  V+SVKVPDPKFSSQTKDKLVSSEV+ AVE  +NE L
Sbjct: 306 QSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKL 365

Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417
            E+  ENP  AK++VGKII+AA AREAAR+ARE+TRRK A+D+A LPGKLADCQE+DPA 
Sbjct: 366 GEWFEENPAQAKVIVGKIIEAALAREAARKARELTRRKTAMDVASLPGKLADCQEKDPAH 425

Query: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477
           SEL+LVEGDSAGGSAKQGR+R NQA+LPL+GKILNVE+ARFD+MLSSQE+ TLITALG G
Sbjct: 426 SELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLSSQEIGTLITALGTG 485

Query: 478 IGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537
           IGRDE++  KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMPEI+E G++YIAQPPLYKV
Sbjct: 486 IGRDEFDIGKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEIIEGGYLYIAQPPLYKV 545

Query: 538 KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597
            +GK E Y+KD  A++ + I   ++GA L        +AG+ L ++V      +++++  
Sbjct: 546 ARGKSEVYLKDQAALEDHLIGQGIEGAVLRL-PGGEEIAGKDLARVVDAARQFKRILDAF 604

Query: 598 ERRYPKAMLKEL----IYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHT 653
              YP+ +L++      + P   + DL   Q V   V A +  +  + + G Q +     
Sbjct: 605 PTHYPRPILEQAALAGAFDPGKADADL---QKVADQVAARLDLVAVEYERGWQGRI---- 657

Query: 654 NADQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERR 713
              Q+    + RV   GV+    LD   +  GE R++ ++  + R + ++ A + R ER 
Sbjct: 658 --TQDHGIRLSRV-LRGVEEIRTLDGAVLRSGEARKLASVSTESRDVYQDPAKLVRKERE 714

Query: 714 QPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAA 773
             +      L  +++E  +G S+QRYKGLGEMNP+QLWETT+DPE+R +L+V ++D   A
Sbjct: 715 VSIHGPLALLSTILEEGEKGQSLQRYKGLGEMNPDQLWETTLDPEARTLLQVQIEDLADA 774

Query: 774 DQLFTTLMGDAVEPRRAFIEENALKAANID 803
           D +FT LMGD VEPRRAFI++NAL   N+D
Sbjct: 775 DDIFTKLMGDVVEPRRAFIQQNALSVENLD 804