Pairwise Alignments

Query, 651 a.a., DNA topoisomerase III from Escherichia coli ECOR38

Subject, 694 a.a., DNA topoisomerase III (RefSeq) from Shewanella amazonensis SB2B

 Score =  709 bits (1829), Expect = 0.0
 Identities = 376/669 (56%), Positives = 467/669 (69%), Gaps = 24/669 (3%)

Query: 1   MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYAR 60
           M L+IAEKPSL RAIA+VLPKPH+KG+G+IE GNG  VTWCIGHLLEQA+PDAY   Y +
Sbjct: 25  MILYIAEKPSLGRAIAEVLPKPHKKGEGYIELGNGDCVTWCIGHLLEQAEPDAYSPEYKQ 84

Query: 61  WNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQ 120
           W LA LPI+P +W+L PR S   QL V+KR + +AS +VHAGDPDREGQLLVDEV+ + +
Sbjct: 85  WQLAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQASSLVHAGDPDREGQLLVDEVISHAK 144

Query: 121 LAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAY 180
           ++  K    QR LI+DLNP AV RA+ +LRSN EFVPL  SALAR+RADWLYG+NMTRAY
Sbjct: 145 VSASKLASTQRLLISDLNPDAVRRALGQLRSNKEFVPLATSALARSRADWLYGLNMTRAY 204

Query: 181 TILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIW 240
           T+ GR  GY GVLSVGRVQTP+LGLVVRRD +IE+F  KD +EV AHI T   E F A W
Sbjct: 205 TLQGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHFEPKDHYEVLAHITTDKGESFCAKW 264

Query: 241 QPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIE 300
           QPSEAC+PY DEEGR+L R LAE VV+RI G+PA+V   + K + ++ PL +SLSALQI+
Sbjct: 265 QPSEACQPYMDEEGRVLSRRLAETVVSRIGGKPALVEHVSHKDKKQAPPLLYSLSALQID 324

Query: 301 AAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPGLLP 360
            AKRFG+SA+ VLD  Q LYE HKLITYPRSD R+LP+E  A    V++A+S +AP LL 
Sbjct: 325 CAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDVLSAVSANAPELLE 384

Query: 361 -QPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAIN-LTENEAKVYNLIARQYLMQFCPDA 418
             P  D  + ++ WDD KVDAHHAI+PT + +A++ L + E ++Y  IARQYL QF P+ 
Sbjct: 385 GAPSPDLHLVSKAWDDSKVDAHHAIVPTGKRTALSQLNQRERQLYLHIARQYLAQFYPNR 444

Query: 419 VFRKCVIELDIAKGKFVAKARFLAEAGWRTLL--GSKERDE-----ENDG---MPLPVVA 468
           +     I+L I  G F+A+A      GWR L    S E+DE     E D     PLP + 
Sbjct: 445 LLADTEIQLIIEGGSFIARASVERAPGWRVLFQGRSTEQDEAKEPQETDASQKTPLPALN 504

Query: 469 KGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATR 528
           KGD   C  GE++ +QTQPP+HFTDATLLSAMTGIAR+V   D+K+IL+ TDGLGTEATR
Sbjct: 505 KGDIARCCHGELLAKQTQPPKHFTDATLLSAMTGIARYVSSPDIKRILKDTDGLGTEATR 564

Query: 529 AGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRY 588
           AGIIELLFKRGFL ++G+ I ++ AG+ L  SLPE+AT  DMTA WE  L+ I ++Q  Y
Sbjct: 565 AGIIELLFKRGFLVRQGKSIVASQAGRGLIASLPEVATTADMTALWERQLSDICQRQLSY 624

Query: 589 QDFMQPLVGTLYQLIDQAKRT------------SVRQFRGIMAPGGGEGKKKDSPRKRAP 636
           + FM PLV  L +LI+QA  +              R FRG    G G      + R R  
Sbjct: 625 KGFMTPLVLELEKLIEQAAASLPTALAGVTAAGPKRSFRGRAGKGKGRAPGASAGRGRKS 684

Query: 637 KKSPPSEEA 645
           + SP  + A
Sbjct: 685 RSSPSGKVA 693