Pairwise Alignments

Query, 651 a.a., DNA topoisomerase III from Escherichia coli ECOR38

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score =  266 bits (680), Expect = 3e-75
 Identities = 200/631 (31%), Positives = 320/631 (50%), Gaps = 44/631 (6%)

Query: 3   LFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWN 62
           L I EKPS+A+ IA  L    ++ D F    +  +V   +GHL+E A P+A D  +   +
Sbjct: 5   LIIPEKPSVAQDIAAALGGFSKREDWFER--DDAIVCSALGHLVELACPEAEDPGF---D 59

Query: 63  LADLPIVPEKWQLQPRPSVTKQLNVIKRFLH--EASEIVHAGDPDREGQLLVDEVLDYLQ 120
           LA LP +P ++ L P    + +L+++K+ ++  +   +V+A D  REG+L    +  Y+ 
Sbjct: 60  LARLPAIPSRFNLAPIAKTSARLSLLKKLMNRQDVQLVVNACDAGREGEL----IFRYIY 115

Query: 121 LAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAY 180
           L    R+ +QR  I  + P A++ A  + R  +E   L  SA +R+  DWL GIN TRAY
Sbjct: 116 LCCGCRKPMQRMWIQSMTPAAIKEAFAKRRPGAELDGLFNSAQSRSEGDWLVGINGTRAY 175

Query: 181 TILG-RNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAI 239
           +IL  R  G + + +VGRVQTP L L+V R+E I +F+AK ++E++          + A 
Sbjct: 176 SILETRVTGERTLSTVGRVQTPTLALIVAREEAIRSFIAKPYYEIQGEFAAKTGV-YGAK 234

Query: 240 WQPS--EACEPYQDEEG-RLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSA 296
           W  +  +A     D    RL  +  A+ +V + +G+     +        + P  F L+ 
Sbjct: 235 WIDTAFQADPSTPDARAERLFDKAKADAIVAKCTGKRPSSVADATTDSISTPPKLFDLTT 294

Query: 297 LQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAP 356
           LQ EA K+FG SA   L I Q LYE  K++TYPR+D   LPE++     A +  +     
Sbjct: 295 LQREANKKFGFSASQTLAIAQALYEKQKVLTYPRTDSSALPEDYLDTARATLTRLG--DG 352

Query: 357 GLLPQP-------VVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKVYNLIARQ 409
           GL   P       +V PD   R +++ K+  H AIIPT   SA  L+  EAK+++L++R+
Sbjct: 353 GLTVSPFAAKAVAMVKPD--KRIFNNAKISDHFAIIPTGLVSA-TLSGEEAKIFDLVSRR 409

Query: 410 YLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGMPLPVVAK 469
           ++  F P A + + V    + +  F A  R L E GW  + G KE D+  D   L  VAK
Sbjct: 410 FIAAFFPPAKYLQTVRLTVVEQETFRASGRVLVEEGWLAVYG-KEADDSED-PALCAVAK 467

Query: 470 GDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRA 529
            +     + E V  +T+PP  FT+ATLL AM      ++D +L++ ++   GLGT ATRA
Sbjct: 468 DELPENRRIEAVSLKTKPPLRFTEATLLGAMESAGADIEDDELREAMK-DRGLGTPATRA 526

Query: 530 GIIELLFK---------RGFLTKKGRYIHSTDAGKALFHSLPE----MATRPDMTAHWES 576
             IE L           + ++ ++ + +  T+    L   L E         + T  WE 
Sbjct: 527 STIEALLADKDGKGRSIQPYVVREKKNLAPTNKAFKLVKFLRENGLTALASAETTGLWEF 586

Query: 577 VLTQISEKQCRYQDFMQPLVGTLYQLIDQAK 607
            L ++ + +C+  DFM  +     + + + +
Sbjct: 587 KLREMEKGRCQRSDFMGEIAALAREFVTRVQ 617