Pairwise Alignments

Query, 308 a.a., flagellar motor protein MotB from Escherichia coli ECOR38

Subject, 360 a.a., OmpA/MotB (NCBI) from Rhodospirillum rubrum S1H

 Score =  179 bits (453), Expect = 1e-49
 Identities = 130/359 (36%), Positives = 181/359 (50%), Gaps = 63/359 (17%)

Query: 9   IVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPL-- 66
           I++KR K   H    G+WK+AYADF+TAMMAFFL++WL++  + ++L+ I+ YF      
Sbjct: 6   IIIKRIKKGGHAHHGGAWKLAYADFVTAMMAFFLLLWLLNSVTEEQLVGISNYFAPTAVS 65

Query: 67  -----ATAVTGGDRI------SNSESP----------IPGGGDDYTQSQ----------- 94
                A  V GG  +      SNS SP          I  GG D++ +            
Sbjct: 66  QSPSGAGGVLGGQVLGEGASQSNSSSPAVQLTLPPPTIGAGGQDFSDANEGVDASDSDDD 125

Query: 95  -----------------GEVNKQPNIEEL---KKRMEQSRLRKLRGDLDQLIESDPKLRA 134
                            G++  +P  ++L   +++ +Q    K   +L Q I++ P L+A
Sbjct: 126 AGKGEGKGASAGDLEGLGKLGVEPTDKQLAAAEEKRQQEEFNKTATELRQAIQAVPSLQA 185

Query: 135 LRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNCISLSG 194
           L   L ID   EGLRIQ+ID +   MF TGS+ + P+ RD+L  +A  +  +PN IS+SG
Sbjct: 186 LSNSLLIDNTPEGLRIQLIDREGLSMFPTGSSALLPHTRDLLALVAKAVADVPNKISISG 245

Query: 195 HTDDFPYASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDD 254
           HTD  PY S   GY NWELSADRA ASRR L+  GL   +V RVVG A T  L    P  
Sbjct: 246 HTDAPPY-SDPSGYGNWELSADRALASRRVLLANGLKEDRVDRVVGKAETEPLLADDPKA 304

Query: 255 AVNRRISLLVL---NKHAEQAILHENAESQNEPVSALEKPEVAPQVSVPT--MPSAEPR 308
             NRRI++ +L   + +AE A    N  +   P   L  P+  P +  P    P A PR
Sbjct: 305 PSNRRIAITLLRDRSLYAEGAAGGGNGGA--APADPLSGPK-PPSILAPADGGPGAAPR 360