Pairwise Alignments

Query, 568 a.a., flagellin FliC from Escherichia coli ECOR38

Subject, 394 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  169 bits (428), Expect = 2e-46
 Identities = 105/278 (37%), Positives = 153/278 (55%), Gaps = 10/278 (3%)

Query: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60
           MA  +NTN  SL TQ N+N + +AL++S++RLS+G RINSAKDDAAG  IANR TS + G
Sbjct: 1   MALTVNTNIPSLNTQRNLNSSSNALATSMQRLSTGSRINSAKDDAAGLQIANRLTSQVNG 60

Query: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQASTGTNSDSDLDSIQDEIKSRL 120
           L  A RNANDGIS+AQT EGAL +  N LQR+R+L +Q++ G+NS S+ +++  E+    
Sbjct: 61  LGVAVRNANDGISLAQTAEGALQQSTNILQRMRDLALQSANGSNSTSEREALNSEVGQLK 120

Query: 121 DEIDRVSGQTQFNGVNVLAKDGSMKI---QVGANDGQTITIDLKKIDSDTLGLNGF-NVN 176
            E+DR+S  T F G  +L  DGS  +   QVG+   + I++ + ++ S +L    F N +
Sbjct: 121 KELDRISNTTTFGGRQLL--DGSFGVASFQVGSAANEIISVGIAEMSSKSLSAKFFENTS 178

Query: 177 GKGTIANKAATVSDLTAAGATGTGPYAVTTNNTALSASDALSRLKTGDTVTTTGSSAATY 236
            K  +A    T  ++          YAVT  N A+   +     K    +  T S    +
Sbjct: 179 PKAAVATTVTTAGEIDVGFTVNGKAYAVTA-NVAVGDDEKTVNQKIAAAINDTNSGVGAF 237

Query: 237 TYDAAKGNFTTQATVADGDVVNFANTLKPAAGTTASGV 274
             D    +  ++ T A     N  + L  A  TTA  +
Sbjct: 238 VKDDNTLSIVSRETEAG---ANSLSALSIAISTTAGKI 272



 Score =  118 bits (295), Expect = 5e-31
 Identities = 111/390 (28%), Positives = 176/390 (45%), Gaps = 29/390 (7%)

Query: 192 TAAGATGTGPYAVTTNNTALSASDALSRLKTGDTVTTTGSSAATYTYDAAKGNFTTQATV 251
           +++ A  T    ++T +   SA D  + L+  + +T+  +       +A  G   + A  
Sbjct: 20  SSSNALATSMQRLSTGSRINSAKDDAAGLQIANRLTSQVNGLGVAVRNANDG--ISLAQT 77

Query: 252 ADGDV---VNFANTLKPAAGTTASGVYTRS--------TGDVKFDVDANGDVTIGGKAAY 300
           A+G +    N    ++  A  +A+G  + S         G +K ++D   + T  G    
Sbjct: 78  AEGALQQSTNILQRMRDLALQSANGSNSTSEREALNSEVGQLKKELDRISNTTTFGGRQL 137

Query: 301 LDATGNLSTNNAGIASSAKLSDLFASGSTLATTGSIQLSGTTYNFGAAATSGVTYTKTVS 360
           LD +  +++   G A++  +S        +A   S  LS   +   +   +  T   T  
Sbjct: 138 LDGSFGVASFQVGSAANEIIS------VGIAEMSSKSLSAKFFENTSPKAAVATTVTTAG 191

Query: 361 ADTVLSTVQSAATANTAVTGATIKYNTGIQSATASFGGANTNGAG---NSNDTYTDADKE 417
              V  TV   A A TA         T  Q   A+    N+ G G     ++T +   +E
Sbjct: 192 EIDVGFTVNGKAYAVTANVAVGDDEKTVNQKIAAAINDTNS-GVGAFVKDDNTLSIVSRE 250

Query: 418 LTTTASYTINYNVDKDTGTVTVASNGAGATGKFAATVGAQAYVNSTGKLTTETTSAGTAT 477
               A+     ++   T   T     AG T   AAT+ A A       +  +  SA  A 
Sbjct: 251 TEAGANSLSALSIAIST---TAGKIPAGVTNPAAATLAATATSQKVSGV--DLLSAENAQ 305

Query: 478 KDPLAALDDAISSIDKFRSSLGAIQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSN 537
           K  L   D AI +ID  R+ LGA+QNR D+ + NL N + N+S A+ RI+D D+A E +N
Sbjct: 306 KAVLV-FDKAIQAIDAQRADLGAVQNRFDNTIANLQNISENVSAARGRIEDTDFAAETAN 364

Query: 538 MSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 567
           +SK QI+QQAG ++LA+A Q+PQ VLSLLQ
Sbjct: 365 LSKNQILQQAGTAILAQAKQLPQAVLSLLQ 394