Pairwise Alignments

Query, 568 a.a., flagellin FliC from Escherichia coli ECOR38

Subject, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

 Score =  145 bits (365), Expect = 4e-39
 Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 4/196 (2%)

Query: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60
           MA  +NTN  ++  Q  +    +A  SS+ERLSSG +INSAKDDAAG  I+NR     +G
Sbjct: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60

Query: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQASTGTNSDSDLDSIQDEIKSRL 120
           L  A RNANDGIS+AQT EGA+ E  N LQR+R+L++Q++ G+NS +D  +IQ+EI +  
Sbjct: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120

Query: 121 DEIDRVSGQTQFNGVNVLAKDGSMK-IQVGANDGQTITIDLKKIDSDTLGLNGFN---VN 176
           DE++RV+  T F G  +L    + K  Q+GA++G+ + +++K + SD   + G      N
Sbjct: 121 DELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQAAN 180

Query: 177 GKGTIANKAATVSDLT 192
           GK       A  +DLT
Sbjct: 181 GKDKNWGVEAGKTDLT 196



 Score = 87.4 bits (215), Expect = 9e-22
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 441 SNGAGATGKFAATVGAQAYVNSTGKLTTETTSAGTA--TKDPLAALDDAISSIDKFRSSL 498
           +N       F   +  +  + +   +T +T    T    ++ +A +D A+  +D  R+ L
Sbjct: 249 NNRIDGAATFGGALAGELGIGAAQDVTVDTLDVTTVGGAQESVAIVDAALKYVDSHRAEL 308

Query: 499 GAIQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQV 558
           GA QNR + A+ NL+N   N++ ++SRI+D D+A E + ++KAQI+ QA +SVLA+A Q 
Sbjct: 309 GAFQNRFNHAINNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQA 368

Query: 559 PQQVLSLL 566
           P   L+LL
Sbjct: 369 PNSALALL 376