Pairwise Alignments

Query, 568 a.a., flagellin FliC from Escherichia coli ECOR38

Subject, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (363), Expect = 6e-39
 Identities = 83/196 (42%), Positives = 123/196 (62%), Gaps = 4/196 (2%)

Query: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60
           MA  +NTN  ++  Q  +    +A  +S+ERLSSG +INSAKDDAAG  I+NR     +G
Sbjct: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60

Query: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQASTGTNSDSDLDSIQDEIKSRL 120
           L  A RNANDGIS+AQT EGA++E  N LQR+R+L++Q++ G+NS S+  +IQ+EI +  
Sbjct: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120

Query: 121 DEIDRVSGQTQFNGVNVLAKDGSMK-IQVGANDGQTITIDLKKIDSDTLGLNGFN---VN 176
           DE++R++  T F G  +L    S K  Q+GA++G+ + + LK + SD   + G +     
Sbjct: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAE 180

Query: 177 GKGTIANKAATVSDLT 192
           GK       A  +D+T
Sbjct: 181 GKDKDWKVQAGANDIT 196



 Score = 90.9 bits (224), Expect = 8e-23
 Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 431 DKDTGTVTVASNGAGATGKFAATVGAQAYVNSTGKLTTETTSAGTATKDPLAALDDAISS 490
           +K TG V  +   AGA    A T             T + TS G A +  +A +D A+  
Sbjct: 250 NKVTGDVAFSGGLAGALNMQAGTAETVD--------TIDVTSVGGAQQS-VAVIDSALKY 300

Query: 491 IDKFRSSLGAIQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNS 550
           +D  R+ LGA QNR + A++NL+N   N++ ++SRI+D D+A E + ++K+QI+ QA +S
Sbjct: 301 VDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSS 360

Query: 551 VLAKANQVPQQVLSLL 566
           VLA+A Q P   LSLL
Sbjct: 361 VLAQAKQAPNAALSLL 376