Pairwise Alignments

Query, 552 a.a., flagellar M-ring protein FliF from Escherichia coli ECOR38

Subject, 565 a.a., flagellar MS-ring protein (RefSeq) from Shewanella loihica PV-4

 Score =  225 bits (573), Expect = 4e-63
 Identities = 167/549 (30%), Positives = 281/549 (51%), Gaps = 41/549 (7%)

Query: 22  KIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASG 81
           +I +I+A +  +A+ V ++LWA+ P+YR L   +  Q+   ++  L +  + Y+      
Sbjct: 37  QITMILALAICLALAVFVMLWAQEPEYRPL-GKMDTQEMVQVLDVLDKNKVNYQIDV--D 93

Query: 82  AIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTI 141
            ++VP D+  ++++ L++ G+    +    L     FG+SQ  E    + + E  L+RTI
Sbjct: 94  VLKVPEDQYQDVKMMLSRAGIDNSPSRDDYLSKDSGFGVSQRMEAARLKNSQEQNLARTI 153

Query: 142 ETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAG 201
           E +  V  A+V LA+PK ++F R +  PSA+V VN   G  L + ++ +IV +V+SAV G
Sbjct: 154 EELKSVSRAKVILAIPKENVFARNRSKPSATVVVNTRRG-GLGQEEVDSIVDIVASAVHG 212

Query: 202 LPPGNVTLVDQGGHLLTQ-SNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260
           L P  VT+ D  G LL   S T+G      +L+     E   + +IE+IL PI+G  N  
Sbjct: 213 LEPTRVTVTDANGRLLNSGSQTAGSARARRELELVQQKEAEYRSKIESILMPILGPENFT 272

Query: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320
           AQV   +DF S EQT ++Y P+      A+RS    E+  +G+   GG+ GALSNQP   
Sbjct: 273 AQVDVNMDFTSVEQTAKRYNPD----LPAVRSEMTVENNSTGAS-TGGIAGALSNQPPME 327

Query: 321 NNAPISTPPANQNNRQQQASTTS---NSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRL 377
            N P            QQA+ TS    + P S+ +  T NYE+D TI HT+  VG V+R+
Sbjct: 328 ANIP------------QQATGTSAQEQTLPGSSHKEATRNYELDTTISHTRQQVGVVRRV 375

Query: 378 SVAVVVNYKTLPDGKP-----LPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF-NS 431
           SV+V V++KT P G+      +  + +++  I  L   A+GF+ +RGD + VV  PF + 
Sbjct: 376 SVSVAVDFKTGPAGEDGQVTRVARTEQELSNIRRLLEGAVGFNTQRGDMIEVVTVPFMDQ 435

Query: 432 SDESGGALPFWQQQVF--IDELLAAGRWLLVLL--VAWLLWRKAVRPQLTRRAEAVKTVQ 487
             E   AL  +++  F    +L+  G  +LVL+  V   + ++ + P   +  +A     
Sbjct: 436 LVEEAPALAIYEEPWFWRAIKLVMGGLIILVLILFVVRPMLKRLIYPDGQKMPDAPSLGD 495

Query: 488 QQAQAREE-VEDAVEVRLSKDEQLQQRRANQRLGAEV-----MSQRIREMSDNDPRVVAL 541
           + A+  ++   D + +    D +         L  ++     M + IR +  N+P +   
Sbjct: 496 ELAEIEDQYAADTLGMLNRPDAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPELSTQ 555

Query: 542 VIRQWINND 550
           V++ W+  +
Sbjct: 556 VVKGWLQEN 564