Pairwise Alignments

Query, 209 a.a., Uncharacterized protein YbdM from Escherichia coli ECOR27

Subject, 180 a.a., conserved hypothetical protein, putative transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  141 bits (356), Expect = 6e-39
 Identities = 76/161 (47%), Positives = 105/161 (65%), Gaps = 1/161 (0%)

Query: 44  EEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHT-DKNAMEIV 102
           + PV  V  V   +++ NDYNPN VAPPE KLL+ SI  DGFT P V  +  +++   +V
Sbjct: 5   KSPVYEVKAVPVEKVLANDYNPNVVAPPEMKLLELSIWEDGFTMPCVCYYNKEEDNYILV 64

Query: 103 DGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRE 162
           DG+HR+ + K S  +  R  G LP+  ++   + R+++TIRHNRARG H I  M  IV E
Sbjct: 65  DGYHRYTVLKTSKRIYKRENGLLPIVVIDKDLSNRMSSTIRHNRARGMHNIELMCNIVAE 124

Query: 163 LSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYS 203
           L + G  D  I K +GMD DE+LRLKQI+GL +LFA+R++S
Sbjct: 125 LDRAGMSDQWIMKNIGMDRDELLRLKQISGLADLFANREFS 165