Pairwise Alignments

Query, 173 a.a., 23S rRNA accumulation protein YceD from Escherichia coli ECOR27

Subject, 174 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  157 bits (397), Expect = 9e-44
 Identities = 77/174 (44%), Positives = 112/174 (64%), Gaps = 1/174 (0%)

Query: 1   MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV 60
           MQ VK+P+++DP+R A  +L Y+GI    Q++R+ E      SDV  S+   +D Q +  
Sbjct: 1   MQTVKIPVSIDPIRAAASKLSYEGIVPGVQLKRLNELCAGDCSDVAVSLECGVDIQGIVY 60

Query: 61  LNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL 120
           L G A   +TL CQRC   FT +V   +CFSP  S+ + + LP+AY+PIE NE GEI L 
Sbjct: 61  LKGKAVTELTLICQRCMTLFTTEVTVDFCFSPCGSEAEIDELPDAYDPIECNEIGEIRLH 120

Query: 121 AMVEDEIILALPVVPVHDSEHCEVSEADMVFGEL-PEEAQKPNPFAVLASLKRK 173
            ++EDE+I+A+P++P+H  E C   + D+V GE+ P + ++PNPFAVL  LK K
Sbjct: 121 QLIEDELIVAMPLIPMHAEESCSKGDQDVVVGEIEPAQEERPNPFAVLEKLKSK 174