Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECOR27

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 1285 bits (3326), Expect = 0.0
 Identities = 650/1139 (57%), Positives = 864/1139 (75%), Gaps = 14/1139 (1%)

Query: 35   LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM---VMNLADWET 91
            L +LTGAA A  +A++ E+++   +++ PD  +ALRL  E+          VM   D ET
Sbjct: 21   LSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPKSIPVMLFPDRET 80

Query: 92   LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 151
            LPYDSFSPHQD++S RL TL ++P+    ++IVP++TLM ++ P SFL G+ L++ KG  
Sbjct: 81   LPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPPQSFLTGNVLLLSKGDN 140

Query: 152  LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 211
               +A+R+QL + GY HV+QV EHGE+A RG+++DLFPMG++ PYR++ FDDE++S+R F
Sbjct: 141  YPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSPYRIELFDDEVESIREF 200

Query: 212  DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK-RDPEHIYQQVSKGTLP 270
            D ++QR+  E+E+I LLPA EFPT+ AAIE FR ++R  FEV  ++PE IYQ VS+  +P
Sbjct: 201  DPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQFEVVVKEPESIYQMVSRKVMP 260

Query: 271  AGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPL 330
            AGIE + PLFF E    LF Y P    LV  GDLE +A+    +   R+ENR VDP+RPL
Sbjct: 261  AGIESYLPLFFDETAS-LFDYLPGECQLVQVGDLENAAKHHLQEINQRYENRRVDPLRPL 319

Query: 331  LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL 390
            LPP+ L+L  +++F   K  PR  +K          A L  + LP++A   + K PL +L
Sbjct: 320  LPPKDLYLLTEQVFEAFKQLPRFLIKGNEATGTCVEAQL--EALPNIAANHKLKQPLISL 377

Query: 391  RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY--LMIGAAEH 448
            ++F      P++F VESEGRREAL ELLA+I+I P  +  LD  S + +   L++     
Sbjct: 378  KEFANG-GTPILFCVESEGRREALLELLAKIEIKPALLDHLDSFSHKPQPFGLIVAPLSQ 436

Query: 449  GFV---DKVRNLALICESDLLGERVAR-RRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 504
            G +    K  + AL+CE++L G+R+A+ RR+D +R ++ D LI++LAEL +GQP+VHL+H
Sbjct: 437  GAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIKDLAELKVGQPIVHLDH 496

Query: 505  GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 564
            GV  Y G+ TL+ GG+  EYL L YA   KLYVPV+SL+LIS+Y+ GA++   L+KLG +
Sbjct: 497  GVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQYSVGADDAPQLNKLGNE 556

Query: 565  AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 624
            +W++A++KA EK+RDVAAELLD+YA+R A+ G A + DRE+Y  F  SFPFE T DQ  A
Sbjct: 557  SWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQFAGSFPFEETVDQETA 616

Query: 625  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 684
            I+AVL+DMC P++MDRLVCGDVGFGKTEVAMRAAF+AV++ KQVA+LVPTTLLAQQHY+N
Sbjct: 617  IDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYEN 676

Query: 685  FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 744
            F+DRFA+WP++IE++SRF++AKEQ  +L ++  G++DI+IGTHKLLQS+ KF++LGLLI+
Sbjct: 677  FKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENLGLLII 736

Query: 745  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 804
            DEEHRFGVR KE+IKA+RAN+DILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RLAVKT
Sbjct: 737  DEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKT 796

Query: 805  FVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 864
            FVREYD   VREA+LREILRGGQVY+L+N VE I+K A  +  L+PEAR+   HGQMRER
Sbjct: 797  FVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEALLPEARVVTAHGQMRER 856

Query: 865  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 924
            +LE+VM+DF+HQ++NVLVCTTIIETGID+P+ANTIIIERAD+FGLAQLHQLRGRVGRSHH
Sbjct: 857  DLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGLAQLHQLRGRVGRSHH 916

Query: 925  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 984
            QAYA+L+ PHPK MT DA KRLEAI +LEDLGAGF LAT DLEIRGAGELLG+EQSG + 
Sbjct: 917  QAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSGHIS 976

Query: 985  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1044
             IGF+LYME+LE+AV +LK G+EPSL+ +   Q E++LR+P+LLP+D++ DVN RLS YK
Sbjct: 977  KIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALLPEDYVGDVNIRLSLYK 1036

Query: 1045 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE 1104
            RIA+  T   L+E+KVELIDRFGLLP   + L++V+  + QA  LGI K+E + KGG +E
Sbjct: 1037 RIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATALGIAKIEMHAKGGSLE 1096

Query: 1105 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1163
            F   + V+P ++IGLLQ QPQ+YR+DGP++LKF+      K R+  +   + +L ++ +
Sbjct: 1097 FNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRLALLSLIISQLMQHRL 1155