Pairwise Alignments

Query, 644 a.a., exoribonuclease II from Escherichia coli ECOR27

Subject, 828 a.a., ribonuclease R from Dechlorosoma suillum PS

 Score =  221 bits (562), Expect = 1e-61
 Identities = 178/605 (29%), Positives = 290/605 (47%), Gaps = 35/605 (5%)

Query: 1   MFQDNPLLAQLKQQ--LHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHG 57
           M +D  LL   K    L  +     G V+    GFGF++ D      F+ P QM KV+HG
Sbjct: 70  MERDGQLLRNRKNSYILPEKADLIPGKVEGHPDGFGFVKPDDGSDDLFLEPKQMDKVLHG 129

Query: 58  DRIIA--VIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD--AIPCR 113
           DR++   +    + R  A   E++E   TR VG++  ++    +V ++  +     IP  
Sbjct: 130 DRVLVRCIGLDRRGRREATIVEVLERANTRLVGRLMEEHGIQFVVAENKRISQDILIPPT 189

Query: 114 AARGLNHEFKE--GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL- 170
           A      + K   G+  + E+   P +  +     + + +    D  +   + L +H+L 
Sbjct: 190 AMTDKRAKLKARPGNVVMVEILEQPSRYSQPI-GRIVEILGNYADPGMEIEIALRKHDLP 248

Query: 171 ----------EKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220
                      K  PD V          REDL  L  VTID  +  D DDA+F + +   
Sbjct: 249 FEFSKEAQAENKAVPDKVKKSDFKG---REDLRELPLVTIDGETARDFDDAVFCEKVGRG 305

Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280
             +L+VAIAD + ++  G  LD+ A  R  + Y P   IPMLP +LS+ +CSL  +  R 
Sbjct: 306 -WRLVVAIADVSHYVRPGMALDQEAYDRGNSVYFPRRVIPMLPEKLSNGICSLNPDVERL 364

Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE---AIAEQV 337
            + C M +SA G+I     F+ A   S A+L Y+QV  WL  +G  QPE+E   A+   +
Sbjct: 365 AMVCDMNISATGSI-GKYRFYPAVFRSHARLTYNQVWGWL--SGQSQPENEVHQALQPHL 421

Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN 397
           + L ++ Q   + R     +  +  + + +   +G++ +IV   R  A+R++EE M+AAN
Sbjct: 422 QNLYKLFQVLLKARKKRGAIDFETVETQMLFNAQGKIENIVPVVRNDAHRLIEECMLAAN 481

Query: 398 ICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD 457
           +CA+  L +     +Y VH G  P   + L A L   G  +   +      + +L  ++ 
Sbjct: 482 VCASGFLHEHKQACLYRVHQGPTPEKLENLRAFLGEFGFSLAGGDEPKAKDYAELLEKIQ 541

Query: 458 AQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516
            +P T  L + + R    A+ + E   HFGL  EAY  +TSPIR+Y D++ HR +KAV+ 
Sbjct: 542 GRPDTQLLQTVMLRSLRQAQYAPENLGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLA 601

Query: 517 GETATRPQ-DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575
           GET    + ++I +  +   R    A RDV +WL   ++K++ G +  F   I  ++  G
Sbjct: 602 GETYNPGKWEDIGLHCSGTERRADEATRDVDNWLKCFYMKERIGEE--FEGTIAGVAAFG 659

Query: 576 MRVRL 580
           + V L
Sbjct: 660 IFVAL 664