Pairwise Alignments

Query, 245 a.a., flagellar type III secretion system pore protein FliP from Escherichia coli ECOR27

Subject, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

 Score =  237 bits (605), Expect = 2e-67
 Identities = 115/221 (52%), Positives = 162/221 (73%), Gaps = 1/221 (0%)

Query: 23  LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPS 82
           +P  T      G + +S+ +Q L  +T L F+PA++++MTSFTRI++V  +LR A+G   
Sbjct: 78  IPAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQ 137

Query: 83  APPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQT 142
            P NQV++G+ALFLTFFIM+PV ++I   A QP+  E+I+ ++A +   +PL+ FML+QT
Sbjct: 138 TPSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQT 197

Query: 143 READLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIAS 202
           R  DL  F  ++    +  PE V M +L+PA++TSELKTAFQIGF +F+PFLIIDLV+AS
Sbjct: 198 RVNDLETFVEMSGA-QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 256

Query: 203 VLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
           VLMA+GMMM+ P  ++LPFKLMLFVLVDGW L++ +LA SF
Sbjct: 257 VLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297