Pairwise Alignments

Query, 245 a.a., flagellar type III secretion system pore protein FliP from Escherichia coli ECOR27

Subject, 249 a.a., flagellar biosynthesis protein FliP (RefSeq) from Shewanella amazonensis SB2B

 Score =  263 bits (671), Expect = 3e-75
 Identities = 124/244 (50%), Positives = 176/244 (72%), Gaps = 7/244 (2%)

Query: 7   VAPVLLWLITPLAFAQ-------LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59
           V  +L W++  +A          LP +T    P GG  +S+ +Q L+ +T+L+F+PA+++
Sbjct: 4   VLAMLFWILAGMASLPAFGADGVLPAVTVTTTPDGGTQYSVTLQILMLMTALSFLPAMVI 63

Query: 60  MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119
           M+TSFTRII+   LLR A+G   AP NQVL+GL+LF+TFFIM+PV DKIY    +P+ EE
Sbjct: 64  MLTSFTRIIVTLSLLRQAIGLQQAPSNQVLIGLSLFMTFFIMAPVFDKIYEQGVKPYMEE 123

Query: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSEL 179
            + + +A E+G +PL+ FML Q R  DL  F  +A    ++ PE  PM +++PA++TSEL
Sbjct: 124 TLPIDQAFERGKEPLKAFMLSQVRITDLETFVNIAGYDNIKSPEEAPMTVIIPAFITSEL 183

Query: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
           KTAFQIGF +F+PFL+IDLV+AS+LMA+GMMM+ P  ++LPFK+MLFVLVDGW L++G+L
Sbjct: 184 KTAFQIGFMLFVPFLVIDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTL 243

Query: 240 AQSF 243
           A SF
Sbjct: 244 ANSF 247