Pairwise Alignments

Query, 565 a.a., two-component system sensor histidine kinase YpdA from Escherichia coli ECOR27

Subject, 560 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  233 bits (595), Expect = 1e-65
 Identities = 161/575 (28%), Positives = 305/575 (53%), Gaps = 37/575 (6%)

Query: 6   NMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVP 65
           +++L +  + +L L+ ++ + +  LF+     S   P ++  +  +FS F + +T+ G  
Sbjct: 2   SLILLLTQQMSLYLVIVYLVSKTPLFKLFAETSPRLPHKIF-IYLVFSSFCIMATYFGEQ 60

Query: 66  VEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCIS 125
             G++ N R +  + GG+L GP  G + G+  G+HRY   +GG T + C I++ L G  +
Sbjct: 61  TSGAIANTRAMGAVLGGLLGGPVTGFLVGLTGGLHRY--SMGGFTDLACAISTTLEGLSA 118

Query: 126 GWINLKIPKAQRWRVGILGGMLC------ETLTMILVIVWAPTTALGIDIVSKIGIPMIL 179
           G I+  + +A +  +     ++C      E + M L+++ A       ++V +I  PM+L
Sbjct: 119 GMISFYLRRAGKSELIYNPLLVCLVTFYAEIMQMSLILLIACPFDAAWELVRQIAPPMLL 178

Query: 180 -GSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLF-RHVNSESLRKVCEIIRD 237
             S+     + +++  +   +  ++  +  AL IA +++ L  +  N ES  KV +I+ +
Sbjct: 179 VNSIGAALFMSMIRDQKTMFDKLSSSFSTKALKIAERSVGLLSKGFNEESSGKVAQIVIE 238

Query: 238 DIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEI 297
           + +  AVAIT+ + +LA++G+G  ++  G    S  T +A+N  K++  +  E   +  I
Sbjct: 239 ETNVGAVAITDREKLLAFIGIGADHHIPGTPISSQITLEAINQNKVMFADGVEIPYSCSI 298

Query: 298 HSM------LVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQ 351
            S       LVIPL     V GT+K+Y        +  + +  G+++++S Q+   R EQ
Sbjct: 299 SSQCKLGSSLVIPLRSDTEVIGTIKLYEPKNKLFLNINRTLGEGIARLLSNQILYGRFEQ 358

Query: 352 LREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDD 411
            + +  +AEL+ LQ+++NPHFLFNALN IS+ I+ +PD ++QL+  LS++LR N++ +  
Sbjct: 359 QQNLLTQAELKLLQAQVNPHFLFNALNTISAIIKRDPDMSKQLLQQLSQFLRINLK-RTT 417

Query: 412 EQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEV-NCCIPSLLIQPLVENAIVHGIQ 470
             + +  EL  I  Y+ IE+ARF +KL V   I E + +C +P+  +QP++ENA+ HG  
Sbjct: 418 GLVTLGDELDHIASYLTIEKARFINKLQVNIAIPESLYHCKVPAFTLQPIIENAVKHGTS 477

Query: 471 PCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANE--MPGNKIGLLNVHHRVK 528
               +G           ++++  R   H +  +VI+     +       +G+  VH R++
Sbjct: 478 HMIDQG-----------QIKVTGRLDEHVLALEVIDNAGLYQPSTDSEGLGMNLVHKRIQ 526

Query: 529 LLYGE--GLHIRRLEPG--TEIAFYIPNQRTPVAS 559
            L+GE  GL +   EP   T++   +P ++T  ++
Sbjct: 527 NLFGEQYGLQV-ECEPDEYTKVIIRLPIEKTETST 560