Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECOR27

Subject, 617 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  211 bits (537), Expect = 4e-59
 Identities = 102/245 (41%), Positives = 166/245 (67%), Gaps = 3/245 (1%)

Query: 81  RRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137
           RR   G+  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  
Sbjct: 367 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 426

Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197
           RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  ++  EP+ EE
Sbjct: 427 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 486

Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257
           + E+++ P D + ++L++ +   S++TP+G D +  L D + D     P D    + +K+
Sbjct: 487 LGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPIDVATVESLKE 546

Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317
           +  + L  L A++ +VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+LR   
Sbjct: 547 ATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPT 606

Query: 318 QTQGL 322
           +++ L
Sbjct: 607 RSEHL 611



 Score = 34.7 bits (78), Expect = 6e-06
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 18  DENGVEVFD-----EKALVEEEPSDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYS 68
           ++ G+ VF+     +  L+ E  +D   AEE   +  A +    R  D  ++Y+ E+G  
Sbjct: 51  NDMGINVFEVAPDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTV 110

Query: 69  PLLTAEEEVYFARRALRG 86
            LLT E E+  A+R   G
Sbjct: 111 ELLTREGEIEIAKRIEEG 128