Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECOR27

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  457 bits (1177), Expect = e-133
 Identities = 238/331 (71%), Positives = 276/331 (83%), Gaps = 7/331 (2%)

Query: 1   MSQNTLKVHDLN---EDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDA 57
           +S    KV + +   E  E  E   E+  ++ LV  E +  D+ EE      A+ + LDA
Sbjct: 3   VSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEF----DASAKSLDA 58

Query: 58  TQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117
           TQ+YL EIG+SPLLTAEEEV +ARRALRGD A+R+RMIESNLRLVVKI+RRY NRGLALL
Sbjct: 59  TQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALL 118

Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177
           DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIH+VKELN+
Sbjct: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNI 178

Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237
           YLRTARELS +LDHEP+ EEIA +LD+PVDDV++MLRLNERI+SVDTP+GGD +KALLDI
Sbjct: 179 YLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDI 238

Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297
           L D     PE +TQDDD+++S++ WL ELN KQ+EVLARRFGLLGYE +TLE+VGREI L
Sbjct: 239 LPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINL 298

Query: 298 TRERVRQIQVEGLRRLREILQTQGLNIEALF 328
           TRERVRQIQVEGLRRLREIL  QGLN+EALF
Sbjct: 299 TRERVRQIQVEGLRRLREILVKQGLNMEALF 329