Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECOR27

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score =  211 bits (536), Expect = 6e-59
 Identities = 96/225 (42%), Positives = 161/225 (71%)

Query: 90  SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
           +++ M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505

Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209
           IRQ I R+I +Q RTIR+P+H+++ +N  +RT+R++ H++  EP+ EE+AE+L  P++ V
Sbjct: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565

Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269
            ++L++ +   S++TP+G + +  L D + D+    P D     +++++  + L  L  +
Sbjct: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625

Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +  VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+L+
Sbjct: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 19/116 (16%)

Query: 21  GVEVFDEKALVEEEPSDNDLAEEELLSQGA------------------TQRVLDATQLYL 62
           G+ V +++   E   SD+D   +E  S+G                   T R  D  ++YL
Sbjct: 74  GINVIEDEEAEEAAASDDDDGADEGESEGGELAPASGTALAASKKKEPTDRTDDPVRMYL 133

Query: 63  GEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRL-VVKIARRYGNRGLALL 117
            E+G   LL+ E E+  A+R   G       + ES L    + I R   N G  LL
Sbjct: 134 REMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGQTLL 189