Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECOR27

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score =  214 bits (545), Expect = 5e-60
 Identities = 97/225 (43%), Positives = 162/225 (72%)

Query: 90  SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
           +++ MIE+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 458 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 517

Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209
           IRQ I R+I +Q RTIR+P+H+++ +N  +RT+R++ H++  EP+ EE+AE+L  P++ V
Sbjct: 518 IRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKV 577

Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269
            ++L++ +   S++TP+G + +  L D + D+    P D   + +++++  + L  L  +
Sbjct: 578 RKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAINSNLRETCTRVLASLTPR 637

Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +  VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+L+
Sbjct: 638 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 682



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 32  EEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86
           EEEP   ++A    +S+    R  D  ++YL E+G   LL+ E E+  A+R   G
Sbjct: 96  EEEPG-REVAATGNVSEDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 149