Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECOR27

Subject, 331 a.a., RNA polymerase, sigma 70 subunit, RpoD family from Marinobacter adhaerens HP15

 Score =  414 bits (1065), Expect = e-120
 Identities = 214/303 (70%), Positives = 252/303 (83%), Gaps = 4/303 (1%)

Query: 31  VEEEPSDNDL-AEEELLSQG---ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86
           VE+EP++     EE++ +QG    +Q+ LDATQLYL EIG+SPLLT EEEVYFAR A +G
Sbjct: 29  VEKEPTEEVAEVEEDIPTQGRYFTSQKQLDATQLYLNEIGFSPLLTPEEEVYFARLARKG 88

Query: 87  DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146
           + + R+RMIESNLRLVVKIARRY NRGL LLDLIEEGNLGLIRAVEKFDPERGFRFSTYA
Sbjct: 89  EESGRKRMIESNLRLVVKIARRYVNRGLTLLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 148

Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206
           TWWIRQTIERAIMNQTRTIRLPIH+VKELN+YLR AREL+ KLDHEPSAEEIA  +DKPV
Sbjct: 149 TWWIRQTIERAIMNQTRTIRLPIHVVKELNLYLRAARELTQKLDHEPSAEEIARMVDKPV 208

Query: 207 DDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFEL 266
            DV RML LNER+ S+DTP+G   EK+LLD +ADE  + P D  QD++M   + KW+ +L
Sbjct: 209 ADVKRMLGLNERVASMDTPIGAGGEKSLLDTVADEGASDPADLLQDNNMCSCLEKWIDQL 268

Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEA 326
           + KQ+EVL+RRFGL GY  +TLE+VG+EIGLTRERVRQIQVE LRRLREIL+ +GL+   
Sbjct: 269 SDKQQEVLSRRFGLRGYPVSTLEEVGQEIGLTRERVRQIQVEALRRLREILEKEGLSGNL 328

Query: 327 LFR 329
           LF+
Sbjct: 329 LFK 331