Pairwise Alignments

Query, 298 a.a., site-specific tyrosine recombinase XerD from Escherichia coli ECOR27

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  340 bits (871), Expect = 3e-98
 Identities = 178/290 (61%), Positives = 218/290 (75%), Gaps = 1/290 (0%)

Query: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67
           IE FLD LW  K L+++TL AYR DLS    +L+ +G +L +    +++  LA R+E G+
Sbjct: 14  IEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHGF 73

Query: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127
             TSSARLLS++RR ++YL  +K  E DP A +  PKL ++LP  LSEA V+RLL  P  
Sbjct: 74  AKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPNR 133

Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187
           + P+E RD+AMLE+LYA+GLRVSELVGLT+  +SLRQGVVR++GKG+KERLVP GE+A  
Sbjct: 134 EDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAGA 193

Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247
            +E YL+  R  LL G + DV+FPS+R   MTRQTFWHRIK YA  AGI +  LSPH LR
Sbjct: 194 EIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGI-AVHLSPHTLR 252

Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297
           HAFATHLLNHGADLRVVQ+LLGHSDLSTTQIYTHVA  RL QLHQ HHPR
Sbjct: 253 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPR 302