Pairwise Alignments

Query, 1034 a.a., multidrug efflux RND transporter permease subunit AcrF from Escherichia coli ECOR27

Subject, 1050 a.a., Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) from Rhodospirillum rubrum S1H

 Score = 1354 bits (3505), Expect = 0.0
 Identities = 670/1032 (64%), Positives = 850/1032 (82%), Gaps = 3/1032 (0%)

Query: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60
            MA+FFI RP+FAWV+AII+M++GAL+IL LP+ QYPT+APP+V ++A YPGA AQT+++T
Sbjct: 1    MASFFIDRPVFAWVIAIIIMLSGALSILFLPIEQYPTVAPPSVRINATYPGASAQTLENT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
            VTQVIEQ MNG+DNL Y+SSTSDS+GS TITLTF    +PDIAQVQVQNKLQLATPLLPQ
Sbjct: 61   VTQVIEQQMNGLDNLRYISSTSDSSGSATITLTFNPEANPDIAQVQVQNKLQLATPLLPQ 120

Query: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180
            EVQQQGI V K+++++LMV GF+S +   T+  I+D+V+SN+KD LSR NGVG+V +FG+
Sbjct: 121  EVQQQGIQVTKANNTFLMVVGFISKDGSLTESGIADFVSSNIKDPLSRTNGVGEVTVFGS 180

Query: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240
            Q+AMRIWLD D L  + LT  +V + +  QN +++AGQ+GG P++PGQ+LNA+I+AQTRL
Sbjct: 181  QHAMRIWLDPDKLISFGLTTTEVKSAITAQNAEVSAGQIGGAPSVPGQELNATIVAQTRL 240

Query: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300
            +  EEFG + +RVN+DGS +RL+D+AR+E+G E+Y  +AR NG+PA+G+G+ LATG NAL
Sbjct: 241  ETVEEFGAILIRVNADGSQIRLRDIARIEIGAESYGTMARYNGQPASGIGVSLATGGNAL 300

Query: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360
            DTA A++A +  L+P FPQ + V+YPYDTTPFV++SI EVV+TL EAI+LVFLVMYLFLQ
Sbjct: 301  DTADAVRATIERLRPIFPQSVDVIYPYDTTPFVKISIEEVVRTLGEAIILVFLVMYLFLQ 360

Query: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N+RATLIPTIAVPVVLLGTF I+AAFG++INTLTMFG+VLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NIRATLIPTIAVPVVLLGTFGIMAAFGFTINTLTMFGLVLAIGLLVDDAIVVVENVERVM 420

Query: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
             ED L P++AT KSM QI GALVGIA+VLSAVF+PMAFF GS GAIYRQFS+T+ SAM L
Sbjct: 421  HEDNLSPRDATRKSMRQITGALVGIALVLSAVFVPMAFFSGSVGAIYRQFSLTVASAMLL 480

Query: 481  SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540
            SVLVA++LTPALCAT LKP   + +  K GFFGWFN  FD + + Y +SVG ++G   RY
Sbjct: 481  SVLVAVVLTPALCATFLKPSHGDPYAKK-GFFGWFNRGFDRTNSFYQSSVGHVIGRKWRY 539

Query: 541  LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600
            LLIY LI+ G+ +LF+RLPSSFLP EDQG+      LPAGATQERTQ+VLDQ++ ++ ++
Sbjct: 540  LLIYGLILVGLGLLFVRLPSSFLPNEDQGILFAQASLPAGATQERTQEVLDQMSRHFRES 599

Query: 601  EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660
            E   VE VFTVNGFSFSG+ QN+G+AFV +K W++R+ D+ S  AV  RA   L +I++ 
Sbjct: 600  EADFVEGVFTVNGFSFSGRGQNSGLAFVRMKNWDDRDPDKGSVFAVARRAMGALSRIKEA 659

Query: 661  FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720
             +  F  PAI+ LG A+GF+F+L+D+AG GH+ L  ARNQLLGMAA++PA L++VRP+GL
Sbjct: 660  RIFAFAPPAIIALGNASGFEFQLLDRAGQGHEKLMAARNQLLGMAAKNPA-LMAVRPDGL 718

Query: 721  EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRM 780
            ED  Q K+++DQEKA AL +SLSDIN T++T  G +YVNDFI+ GRVKKVY+ ADA FRM
Sbjct: 719  EDNPQLKIDIDQEKASALQLSLSDINSTLTTTWGSSYVNDFIENGRVKKVYLMADAPFRM 778

Query: 781  LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840
               D+D+ YVR++ GEMVPFSAFT  HW+YGSPRLERYNG  S +I G+ APG S+G AM
Sbjct: 779  QAADLDRWYVRNSQGEMVPFSAFTDVHWIYGSPRLERYNGQSSRKIAGQPAPGMSTGAAM 838

Query: 841  ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900
            A ME +A+KLP G GY+WTG+SY+ERLSG+QAPAL A+S +VVFLCLAALYESW+IP +V
Sbjct: 839  AEMEAMAAKLPPGFGYEWTGLSYEERLSGSQAPALYALSIIVVFLCLAALYESWAIPFAV 898

Query: 901  MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960
            +LVVPLGI+G ++A +     NDV+F +GLLTT+GL+AKNAILIVEFAK+L E  G  ++
Sbjct: 899  ILVVPLGILGAVIATSARGLSNDVFFQIGLLTTMGLAAKNAILIVEFAKELYE-GGMDLL 957

Query: 961  EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020
            EAT+ A R RLRPI+MTS+AF LGVLPLAI+NGAGSG+QNA+G GV+GGM+SAT+LAIFF
Sbjct: 958  EATVHAARQRLRPIIMTSMAFSLGVLPLAIANGAGSGSQNAIGTGVLGGMISATVLAIFF 1017

Query: 1021 VPVFFVVIRRCF 1032
            VP+FF++I R F
Sbjct: 1018 VPLFFILILRAF 1029