Pairwise Alignments

Query, 1034 a.a., multidrug efflux RND transporter permease subunit AcrF from Escherichia coli ECOR27

Subject, 1044 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1292 bits (3344), Expect = 0.0
 Identities = 660/1032 (63%), Positives = 809/1032 (78%), Gaps = 4/1032 (0%)

Query: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60
            MA FFI RPIFAWV+A+I+M+AG L+I  LPV+QYP+IAPP V +SANYPGA A+ V+D+
Sbjct: 1    MARFFIDRPIFAWVIALIIMLAGVLSIRTLPVSQYPSIAPPTVVISANYPGASAKIVEDS 60

Query: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
            VTQVIEQ M GID+L Y++STSDS G+  ITLTF +  DPDIAQVQVQNKLQ A  LLPQ
Sbjct: 61   VTQVIEQRMKGIDHLRYIASTSDSFGNAEITLTFNAEADPDIAQVQVQNKLQGAMTLLPQ 120

Query: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180
            EVQ QG+ V KSSS +LMV GFVS +    + DI+DYV +NV+D +SR+ GVG++QLFGA
Sbjct: 121  EVQAQGVDVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANVQDPMSRVPGVGEIQLFGA 180

Query: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240
            QYAMRIWLD   L +Y LT ++VI+ ++ QN Q++AGQLGGTP++ GQ+LNA++ AQ+RL
Sbjct: 181  QYAMRIWLDPLKLTQYNLTSLEVISAIRAQNAQVSAGQLGGTPSIQGQELNATVSAQSRL 240

Query: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300
            + PEEF K+ L+ ++ G+ V L DVARVELG E+Y V++  NGKPA GL IKLATGANAL
Sbjct: 241  QTPEEFRKIILKSDTSGANVFLGDVARVELGSESYAVVSFYNGKPATGLAIKLATGANAL 300

Query: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360
            DTA+A++ K+ EL+PFFPQG+ V+YPYDTTPFV+ SI  VV TL EAI+LVF++MYLFLQ
Sbjct: 301  DTAEAVRDKVEELRPFFPQGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQ 360

Query: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N RATLIPTIAVPVVLLGTFAIL+A G+SINTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
             E+ L P EAT KSM QI GALVGI + LSAVF+PMAF  GSTG IYRQFSITIVSAMAL
Sbjct: 421  SEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMAL 480

Query: 481  SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540
            SVLVALILTPALCAT+LKPV   H   + GFFGWFN  FD   N Y +SV  I+    R 
Sbjct: 481  SVLVALILTPALCATMLKPVQKGHGHIETGFFGWFNRNFDRLTNRYESSVAGIVKRGFRV 540

Query: 541  LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600
            ++IY  +V  +  +F+R+P++FLP+EDQG+  T   LP  +TQE T KVLD+V+D+++  
Sbjct: 541  MMIYVALVVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTLKVLDKVSDHFMAE 600

Query: 601  EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660
            E   V SVF+V GFSF+GQ QN G+AFV LK W ER       +++  RA     +I+D 
Sbjct: 601  E--GVRSVFSVAGFSFAGQGQNMGIAFVGLKDWSEREAPGMDVQSIAGRAMGAFSQIKDA 658

Query: 661  FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720
            FV  F  PA++ELGTA GFD  L D+ G GHD L  ARNQLLGMAAQ+P +L+ VRPNG 
Sbjct: 659  FVFAFVPPAVIELGTANGFDMYLQDKNGQGHDKLIAARNQLLGMAAQNP-NLMGVRPNGQ 717

Query: 721  EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRM 780
            ED   ++L +D  K  ALGV ++++N  ++TA GG+YVNDFIDRGRVKKV+VQ DA++RM
Sbjct: 718  EDAPIYQLHIDHAKLSALGVDIANVNSVLATAWGGSYVNDFIDRGRVKKVFVQGDAQYRM 777

Query: 781  LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840
             PED++  YVR+  G+MVPFSAF T  W YGSPRLER+NGLP++ IQG  APG S+G AM
Sbjct: 778  QPEDLNTWYVRNNKGDMVPFSAFATGSWEYGSPRLERFNGLPAVNIQGATAPGFSTGAAM 837

Query: 841  ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900
             +ME+L  +LP G G +W G+SY+ERLSGNQAPAL A+S +VVFL LAALYESWS+P +V
Sbjct: 838  TIMEDLVKQLPPGFGIEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWSVPFAV 897

Query: 901  MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960
            +LVVPLGI+G LLA       NDV+F VGLLTT+GL+ KNAILIVEFAK+  EK G G+V
Sbjct: 898  ILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEK-GAGLV 956

Query: 961  EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020
            EATL AVR+RLRPILMTSLAF LGV+PLAIS G GSG+QNA+G GV+GGM+S+T L IFF
Sbjct: 957  EATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSSTFLGIFF 1016

Query: 1021 VPVFFVVIRRCF 1032
            VP+FFV++ R F
Sbjct: 1017 VPLFFVIVERIF 1028