Pairwise Alignments

Query, 553 a.a., putative transporter from Escherichia coli ECOR27

Subject, 562 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (336), Expect = 1e-35
 Identities = 131/567 (23%), Positives = 245/567 (43%), Gaps = 60/567 (10%)

Query: 1   MSDIALTVSILALVAV-----VGLFIGNVKFRGIGLG-IGGVLFGGIIVGHFVSQAGMTL 54
           M+ +  T+ I   +AV     +G ++GN  F+G  LG +   L   +++G F     +TL
Sbjct: 1   MNWLKTTLQIYPEIAVFLSLAIGYWVGNKTFKGFSLGAVTATLLAAVVIGQF----DITL 56

Query: 55  SSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKL 114
           SS++  +      ++F++ +G  +GP F   +   GL   LFAV+  +   L   +  K+
Sbjct: 57  SSNVKSIF----FLMFLFAVGYGIGPQFVQGIAKDGLPQALFAVVACLFSLLFPILCAKI 112

Query: 115 FDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPME----MVDQMGMSYAMAYPFGICG 170
               L    G F+G  T + ++G     +  L  P E    M   + ++YA+ Y FG  G
Sbjct: 113 AGYDLGATAGFFAGTQTISASMGLATDAIVHLDLPAEESKKMFSVIPVAYAVTYIFGTVG 172

Query: 171 ILFTM-WMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNG 229
               +  ++  + R+++E   + + +   NGG    T N R E    H  A++   +   
Sbjct: 173 SAIVLAQIIPKLLRIDLEAACKDYMAK--NGGT---TENARGE---WHTYALRSYKLTEK 224

Query: 230 D-----------------KIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQL 272
           +                 K+    L+ E  +    P++ +  GD++ + G+    ++A +
Sbjct: 225 NRAVGMTIHEFEAQFPHRKVFVEGLRHEGKVIDTDPNSKLSTGDIIAVGGE----YDAFV 280

Query: 273 VIGQEVDTSLSTKGTDLRVERVV-----VTNENVLGKRIRDL-HFKERYDVVISRLNRA- 325
                 D+   T+ ++L  + V+     VT+  + GK + +L      + + + ++ R  
Sbjct: 281 EFFDHPDSFDETQDSELLNQPVLGVDVYVTSRGINGKTLAELGKTTSSHGIFLRKIKRGP 340

Query: 326 -GVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLL 384
             +E+       L  GDIL L G    ++ V   LG   Q+   + +      I +G LL
Sbjct: 341 KAIEIPILPQTRLFRGDILTLSGLTKDVERVTKQLGVIDQRGNSMDVAFWAFAIVIGALL 400

Query: 385 GSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLS 444
           GS+   +   P  L L  AGG LI  LI   + S    + ++P      +  +G+ +F++
Sbjct: 401 GSLVFKIGNLP--LTLSTAGGVLIAGLIFSWVRSFHPTFGWVPEPTVWFMNSVGLNVFIA 458

Query: 445 VVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSM 504
            +G+ +G +FV  L    G S   +G + T +PL    ++ + + K +   + G  AG+ 
Sbjct: 459 AIGISAGPNFVAGL-KELGFSLFLWGVVATTLPLFFAALVGKYVFKFHPAILLGCCAGAR 517

Query: 505 TDPPALAFANNLHPTSGAAALSYATVY 531
           T   +L   N     S   +L Y   Y
Sbjct: 518 TTTASLGMINE-KAKSNIPSLGYTITY 543