Pairwise Alignments

Query, 553 a.a., putative transporter from Escherichia coli ECOR27

Subject, 564 a.a., putative transport protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  152 bits (383), Expect = 4e-41
 Identities = 142/553 (25%), Positives = 247/553 (44%), Gaps = 40/553 (7%)

Query: 13  LVAVVGLFIGNVKFRGIGLG-IGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFV 71
           L    G ++G  K     LG +  VL  G++VG    Q  +++   M  V      +LF+
Sbjct: 18  LTLFAGFWLGRFKIGKFSLGTVTSVLLVGVLVG----QLNISVDGPMKAVF----FLLFL 69

Query: 72  YTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVT 131
           + +G +VGP FF  L+  GL    FAVL+ I+  +   IL K+    +    G+ +G+ T
Sbjct: 70  FAVGYKVGPQFFRGLKKDGLPQVGFAVLMCIVSLIAPWILAKIMGYHVGEAAGLLAGSQT 129

Query: 132 NTPALGAGQQILRDLGTP----MEMVDQMGMSYAMAYPFGICGILFTMW-----MLRVIF 182
            +  +G     +  L          ++ + ++YA+ Y FG  G  + +      ML  + 
Sbjct: 130 ISAVIGVASDTINQLSISDAQKATFINAIPVAYAVTYIFGTAGSAWILASLGPKMLGGLE 189

Query: 183 RVNV---ETEAQQHESSRTNGG--ALIKTINIRVENPNLHDLA-------IKDVPILNGD 230
           +V     E EA+   S     G    ++ +  R    +            +++  + N  
Sbjct: 190 KVKADCKELEAKMGTSEADEPGFYTALRPVVFRAYKIDNEWFGKGKTVSELENYLVENDK 249

Query: 231 KIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLR 290
           ++   R++++  ++  +PD ++Q GD + L G+       +  IG EV   +  +  D  
Sbjct: 250 RLFVERVRQKGVIEEVTPDMLLQPGDEVVLSGRREYAIGEEDWIGPEV---IDAQLLDFP 306

Query: 291 VER--VVVTNENVLGKRIRDLH-FKERYDVVISRLNRAGVELVASGDISLQFGDILNLVG 347
            E   V+VT+    G+++  +   K  + V I  + RAG+ +       +  GDIL L G
Sbjct: 307 AETLPVMVTHRTFAGEKVSTIRALKFMHGVSIRSIKRAGINVPVLAQTVIDSGDILELTG 366

Query: 348 RPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPL 407
               ++  A  +G   +   Q  M+ V +GI LG L+G++ + + G P  + L  +GG L
Sbjct: 367 TKLEVETAAKQMGYIDRPTNQTDMIFVGLGILLGGLVGALAIHLGGIP--ISLSTSGGAL 424

Query: 408 IMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWI 467
           I  L+ G + S    +  +P  +   L  +G+ +F++VVG+ +G  FV T     G S  
Sbjct: 425 IAGLVFGWLRSKHPTFGGIPEPSLWVLNNVGLNMFIAVVGIAAGPSFV-TGFKEVGFSLF 483

Query: 468 GYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSY 527
             GAL TA+PL++  ++ R L K +     G  AG+ T   AL    +    S   AL Y
Sbjct: 484 IVGALATAIPLLSGLLMGRYLFKFHPALTLGCTAGARTTTAALGAIQDA-LGSDTPALGY 542

Query: 528 ATVYPLVMFLRII 540
              Y +   L II
Sbjct: 543 TVTYAVGNTLLII 555



 Score = 51.6 bits (122), Expect = 8e-11
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)

Query: 4   IALTVSILALVAVVGLFIGNVKFRGIGLGI-GGVLFGGIIVGHFVSQAGMT--LSSDMLH 60
           + L + +  LV  + + +G +    I L   GG L  G++ G   S+      +    L 
Sbjct: 393 VGLGILLGGLVGALAIHLGGIP---ISLSTSGGALIAGLVFGWLRSKHPTFGGIPEPSLW 449

Query: 61  VIQEFGLILFVYTIGIQVGPGFFASLRVSGLRL---NLFAVLIVIIGGLVTAILHKLFDI 117
           V+   GL +F+  +GI  GP F    +  G  L      A  I ++ GL+      LF  
Sbjct: 450 VLNNVGLNMFIAVVGIAAGPSFVTGFKEVGFSLFIVGALATAIPLLSGLLMG--RYLFKF 507

Query: 118 PLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWM 177
              + LG  +GA T T ALGA Q  L          D   + Y + Y  G    L  +W 
Sbjct: 508 HPALTLGCTAGARTTTAALGAIQDALGS--------DTPALGYTVTYAVG--NTLLIIWG 557

Query: 178 LRVI 181
           + ++
Sbjct: 558 VAIV 561



 Score = 40.4 bits (93), Expect = 2e-07
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 18/144 (12%)

Query: 372 LPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSAN 431
           L +F+ +  G  LG   +          LG     L++ +++G++            S +
Sbjct: 14  LAIFLTLFAGFWLGRFKI------GKFSLGTVTSVLLVGVLVGQLNI----------SVD 57

Query: 432 LALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKM 491
             ++ +  +LFL  VG K G  F   L   +GL  +G+  L+  V LI   ILA+++   
Sbjct: 58  GPMKAVFFLLFLFAVGYKVGPQFFRGLKK-DGLPQVGFAVLMCIVSLIAPWILAKIMG-Y 115

Query: 492 NYLTMCGMLAGSMTDPPALAFANN 515
           +     G+LAGS T    +  A++
Sbjct: 116 HVGEAAGLLAGSQTISAVIGVASD 139