Pairwise Alignments

Query, 928 a.a., DNA polymerase I from Escherichia coli ECOR27

Subject, 930 a.a., DNA polymerase I (RefSeq) from Shewanella loihica PV-4

 Score = 1192 bits (3085), Expect = 0.0
 Identities = 617/929 (66%), Positives = 726/929 (78%), Gaps = 14/929 (1%)

Query: 1   MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAV 60
           M  I +NPLILVDGSSYLYRAY+A P LTNS GE TGA+YGV+NMLRSL+ QYKPT  AV
Sbjct: 15  MPNIAENPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPTQMAV 74

Query: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120
           VFDAKGKTFR+E++  YK+HRPPMPDDLR QIEPLH +++A+GLPL+ + GVEADDVIGT
Sbjct: 75  VFDAKGKTFRNEMYAEYKAHRPPMPDDLRTQIEPLHRIIRALGLPLVCIPGVEADDVIGT 134

Query: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180
           +AR+A + GR VLISTGDKDMAQLV   ITLINTMTNTILGP+EV  K+GV PELIID L
Sbjct: 135 IARQASQEGRAVLISTGDKDMAQLVDDKITLINTMTNTILGPDEVSEKFGVGPELIIDLL 194

Query: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240
           AL GD +DNIPG+PGVGEKTA A+LQG+GG++ + A PEK+  L FRGAKTM AK+ ++ 
Sbjct: 195 ALQGDKADNIPGLPGVGEKTALAMLQGVGGVEAILANPEKMPELGFRGAKTMPAKIAEHG 254

Query: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300
           ++  LSY+LATIK DVELE    QL +Q    +EL+  + + EFKRW A+V   K     
Sbjct: 255 DMLKLSYELATIKCDVELEQDWHQLNIQGADRDELIKCYGEMEFKRWLAEVLDNK----- 309

Query: 301 GAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDS 360
               +A  QE   ADE P   A    YD   TIL  E L  W+  L  AP+FA DTET S
Sbjct: 310 ---SSASSQEE--ADEVPAPQAIDTQYD---TILTWEALDEWLKALAAAPLFALDTETTS 361

Query: 361 LDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQN 420
           L+ + A +VGLSFAIEPG AAY+P+AHDY DAP+Q+  E+ L  LKPLLED   LKVGQN
Sbjct: 362 LNYMEAKMVGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAKLKPLLEDPSLLKVGQN 421

Query: 421 LKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKG 480
           LKYD  ILAN GI L+G+AFDTMLESY+ NSVA +H+MD LA ++L HK I+FEEIAGKG
Sbjct: 422 LKYDMSILANVGIALKGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKG 481

Query: 481 KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRI 540
             QLTFNQI LE A  YAAEDAD+TL+LH  +WP LQK     +VF +IE+PLV +LS+I
Sbjct: 482 VKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLQKASELASVFTDIELPLVSILSQI 541

Query: 541 ERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLK 600
           ER GV ID  +L   S+EL  ++ ELE+KA+EIAGE FNL STKQLQ + FEK G   LK
Sbjct: 542 ERQGVLIDSMLLGQQSDELARKIDELEQKAYEIAGEPFNLGSTKQLQALFFEKLGYPVLK 601

Query: 601 KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH 660
           KTP GAPST+EEVL ELALDYPLPK+ILE+R L+KLKSTYTDKLPLM++ KTGRVHTSYH
Sbjct: 602 KTPKGAPSTAEEVLVELALDYPLPKIILEHRSLSKLKSTYTDKLPLMVDGKTGRVHTSYH 661

Query: 661 QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD 720
           QA+ ATGRLSS++PNLQNIP+R EEGRRIR AF+APE   I++ADYSQIELRIMAHLS+D
Sbjct: 662 QAIAATGRLSSSEPNLQNIPIRTEEGRRIRHAFVAPEGRKILAADYSQIELRIMAHLSQD 721

Query: 721 KGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP 780
           KGLL+AFAEGKDIHRATAAEVF +    VTSEQRR AKA+NFGLIYGMSAFGLARQL+IP
Sbjct: 722 KGLLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIP 781

Query: 781 RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAE 840
           R EAQ+Y+D+YF+RYPGVL+YME TRA A EQGYV TL GRRLYLP IK  N  RR AAE
Sbjct: 782 RHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAMRRQAAE 841

Query: 841 RAAINAPMQGTAADIIKRAMIAVDAWLQAE-QPRVRMIMQVHDELVFEVHKDDVDAVAKQ 899
           RAAINAPMQGTAADIIK+AMI +  W++ E Q  + MIMQVHDELVFEV  D  D++  +
Sbjct: 842 RAAINAPMQGTAADIIKKAMINIAQWIETETQGEITMIMQVHDELVFEVDADKADSLKLK 901

Query: 900 IHQLMENCTRLDVPLLVEVGSGENWDQAH 928
           + +LM     LDV LL E G G+NW+QAH
Sbjct: 902 VCELMAQAASLDVELLAEAGIGDNWEQAH 930