Pairwise Alignments

Query, 504 a.a., L-carnitine/gamma-butyrobetaine antiporter from Escherichia coli ECOR27

Subject, 523 a.a., choline/carnitine/betaine transporter (RefSeq) from Shewanella loihica PV-4

 Score =  206 bits (525), Expect = 1e-57
 Identities = 142/490 (28%), Positives = 247/490 (50%), Gaps = 26/490 (5%)

Query: 20  IIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRL 79
           +I   L    + D + A  V++ +   +   + W F W   + +     L+  PY K RL
Sbjct: 40  LIAAFLLATLLTDAETAKSVLDGIKWKIIGAFDWLFIWSGNIFVIFCLGLILSPYGKIRL 99

Query: 80  GNEPP--EFSTASWIFMMFASCTSAAVLFWGSIEIYYYIS---TPPFGLEPNSTGAKELG 134
           G      ++S  SW+ M+FA+     ++FW   E   Y +     P G+EPN+  A +L 
Sbjct: 100 GGNEATADYSFLSWLSMLFAAGMGIGLMFWSVAEPVAYFTGWYETPLGVEPNTPEAAKLA 159

Query: 135 LAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEV-IRPSSTLVPLVGEKHAKGLFGTIVD 193
           L  ++FHWG  PWA Y  ++++ A+F + + M + IR  S   PL+G++ A G  G IVD
Sbjct: 160 LGATMFHWGLHPWAIYGVVALSLAFFTYNKGMPLSIR--SIFYPLLGDR-AWGWAGHIVD 216

Query: 194 NFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQK 253
              ++A +F + TSLGL        +  +FGI  +L L  I+I    +L  + V  G+  
Sbjct: 217 ILAVLATLFGLATSLGLGAQQAASGIHHVFGIEASLGLQMIVIVAVTLLAVVSVVRGIDG 276

Query: 254 GVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKG--G 311
           GV++ S++   ++FL+L  V ++  A  + +  T     L+ Y+  ++  ++P  +    
Sbjct: 277 GVKVISNINMIVAFLLLILVAMIGYAVSLGSIPTT----LMAYVENIIPLSNPHGRTDEA 332

Query: 312 FPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTL 371
           + QGWTVFYWAWW+ ++  + +F+AR+S+GRTVRE    ++L  TA T I  +V G    
Sbjct: 333 WFQGWTVFYWAWWISWSPFVGMFIARVSKGRTVREFITAVLLVPTAVTLIWMSVFGG--- 389

Query: 372 LLIDKNIINIPNLIEQ--YGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYT 429
           + ID+ +  +  L  +    V  A+ E +  LP  T       +L  +  +T  ++ S  
Sbjct: 390 MAIDQVVNKVGELGAKGLTDVPLAMFEMFDVLPFGTLLSIIAVVLVLVFFITSSDSGSLV 449

Query: 430 LAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGG---LKPIQTAIIAGGCPLFFV 486
           +   T     D    P+  R+ W++L G I + LL +GG   ++ +Q   I+   P   +
Sbjct: 450 IDSITAGGKIDA---PVPQRVFWALLEGAIAMALLWIGGTEAIQALQAGAISTALPFTVI 506

Query: 487 NIMVTLSFIK 496
            +++ +S +K
Sbjct: 507 LLLMCVSLLK 516