Pairwise Alignments

Query, 293 a.a., IS3 family transposase ISEc48 from Escherichia fergusonii Becca

Subject, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 57.4 bits (137), Expect = 3e-13
 Identities = 47/251 (18%), Positives = 103/251 (41%), Gaps = 19/251 (7%)

Query: 43  RQRRDEAADAEVLSRILDIIGDMPAYGYRRVWAILRRQSRNEGLPFVNAKRVYRIMSENS 102
           +Q R    + E++ ++      +  Y  R++   LR ++       V  +R +     ++
Sbjct: 35  KQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADN 94

Query: 103 LLLLHDKPSRRQREHKGRISVKESNQRWCSDGFEFGCDDGEKLRVTFVLDCCDREAIDWA 162
           LL ++  P    +   G ++  ++ + W              + +  V+D   R  + W 
Sbjct: 95  LLNMNFNPVSANQVWAGDVTYLKTGEGW--------------MYLAVVMDLYSRRIVGWR 140

Query: 163 ASTGGYDKATVQDVMLGAIEKRFGDKVPEQSIQWLTDNGSAYRAHETRQFARELNLKPCT 222
                 DK    D++  A+ K +  + P + + + +D GS Y + +  +      ++   
Sbjct: 141 I-----DKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSKQFGRLLSSYGIRASM 195

Query: 223 TAISSPQSNGVTERFVKTMKEDYIAFMPKPNVRTALHNLAVAIEHYNENHPHSALGYRSP 282
             + +   N V ERF  ++K D+I  + +P       ++   I++YN    HSA    SP
Sbjct: 196 GDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIKYYNLERLHSANNDLSP 255

Query: 283 REYRRQRVMLT 293
            E+   +V ++
Sbjct: 256 VEFENSQVKVS 266