Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 246 a.a., flagellar biosynthesis sigma factor from Pseudomonas simiae WCS417

 Score =  243 bits (619), Expect = 4e-69
 Identities = 128/237 (54%), Positives = 161/237 (67%), Gaps = 3/237 (1%)

Query: 7   YLQLQRESTEEMVRRHAPLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAARNYATDRM 66
           Y +  R+S  E++ R+APLV+RIAYHL+ RLP SV V+DL+QAGMIGLLE +  Y   + 
Sbjct: 9   YKRSARDSQGELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDASKG 68

Query: 67  ASFETYAGIRIRGAMLDELRKTDWTPRSVHRKLREVSEVVRQIENETGADATDAEVIRRL 126
           ASFETYAGIRIRGAMLDE+RK DW PRSVHR  R VS+ +R IE +TG DA D EV   L
Sbjct: 69  ASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAEL 128

Query: 127 GIDAQEYHQILADAASARLLSLS--APEDDEDGAALDVADQEGLGPQDRFEQEGMRGALV 184
            +   +Y+ IL D   +RL S      + + +G   D A    + P    E E  +GAL 
Sbjct: 129 QLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASAH-MEPSRDLEDERFQGALA 187

Query: 185 EAIGGLPEREQLVMSLYYEQELNLKEIGAVLGVTESRVCQIHGQALIRLRARMTGWR 241
           +AI  LPERE+LV++LYY++ELNLKEIG VLGV+ESRV Q+H Q   RLR R+  WR
Sbjct: 188 DAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEWR 244