Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  241 bits (616), Expect = 8e-69
 Identities = 129/242 (53%), Positives = 162/242 (66%), Gaps = 13/242 (5%)

Query: 7   YLQLQRESTEEMVRRHAPLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAARNYATDRM 66
           Y +  +++  E++ R+APLV+RIAYHL+ RLP +V V+DL+QAGMIGLLE A  Y   + 
Sbjct: 9   YSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKG 68

Query: 67  ASFETYAGIRIRGAMLDELRKTDWTPRSVHRKLREVSEVVRQIENETGADATDAEVIRRL 126
           ASFETYAGIRIRGAMLDE+RK DW PRSVHR  R VS+ +R +E  TG DA D EV   L
Sbjct: 69  ASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAEL 128

Query: 127 GIDAQEYHQILADAASARLLSLSAPEDD-------EDGAALDVADQEGLGPQDRFEQEGM 179
            +   +Y+ IL D   +RL S      D       EDGA+  V    GL      E+E  
Sbjct: 129 QLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGL------EEERF 182

Query: 180 RGALVEAIGGLPEREQLVMSLYYEQELNLKEIGAVLGVTESRVCQIHGQALIRLRARMTG 239
           + AL EAI  LPERE+LV++LYY++ELNLKEIG VLGV+ESRV Q+H Q   RLR+R+  
Sbjct: 183 QAALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGE 242

Query: 240 WR 241
           WR
Sbjct: 243 WR 244