Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 241 a.a., RNA polymerase sigma factor for flagellar operon from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  144 bits (362), Expect = 2e-39
 Identities = 84/211 (39%), Positives = 124/211 (58%), Gaps = 9/211 (4%)

Query: 24  PLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAARNYATDRMASFETYAGIRIRGAMLD 83
           PLVRR    L  ++  ++D DD++Q G++GLLEA R Y  +    F  +AG+R+RGA+LD
Sbjct: 34  PLVRRTVRQLSSQVGGAMDRDDMMQIGLMGLLEALRRYG-EPDERFPAFAGLRVRGAILD 92

Query: 84  ELRKTDWTPRSVHRKLREVSEVVRQIENETGADATDAEVIRRLGIDAQEYHQILADAASA 143
           ELR+ DW PRSV ++   +   VR +    G + T+AEV+  L I  + Y     D+ + 
Sbjct: 93  ELRRQDWRPRSVRQESFRLKAEVRALTKRLGREPTEAEVLAELDISPEAYLAYQQDSNAE 152

Query: 144 RLLSLSAPEDDEDGAALDVADQEGLGPQDRFEQEGMRGALVEAIGGLPEREQLVMSLYYE 203
            L S     DD      D    E    +    +  ++ +L +A+G L EREQ V+ LYYE
Sbjct: 153 TLASF----DD----LFDTLSNEASSQRSPEAELVLKRSLQQALGTLSEREQRVIQLYYE 204

Query: 204 QELNLKEIGAVLGVTESRVCQIHGQALIRLR 234
            EL+LKEI AVLG+TE+R+CQI+  AL +++
Sbjct: 205 YELSLKEIAAVLGLTEARICQINKAALQKMK 235