Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 239 a.a., RNA polymerase sigma factor for flagellar operon from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  197 bits (501), Expect = 2e-55
 Identities = 109/219 (49%), Positives = 143/219 (65%), Gaps = 1/219 (0%)

Query: 20  RRHAPLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAARNYATDRMASFETYAGIRIRG 79
           +R+ PLVR  A  L  RLP SV++DDL+QAG IGLL A   Y   +  +F TYA  RIRG
Sbjct: 18  QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRG 77

Query: 80  AMLDELRKTDWTPRSVHRKLREVSEVVRQIENETGADATDAEVIRRLGIDAQEYHQILAD 139
           AMLDELR  DW PRSV R  REV++ + Q+E E G +AT+ EV  RLGI   EY Q+L D
Sbjct: 78  AMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEVAERLGIPVAEYRQMLLD 137

Query: 140 AASARLLSLSA-PEDDEDGAALDVADQEGLGPQDRFEQEGMRGALVEAIGGLPEREQLVM 198
             +++L S     E+  D   L   + +   P  +  +  +R  +++AI  LPEREQLV+
Sbjct: 138 TNNSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQRVMDAIESLPEREQLVL 197

Query: 199 SLYYEQELNLKEIGAVLGVTESRVCQIHGQALIRLRARM 237
           +LYY++ELNLKEIGAVL V ESRV Q+H QA+ RLR ++
Sbjct: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236