Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 613 a.a., RNA polymerase, sigma 70 (sigma D) factor from Escherichia coli BL21

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 14/232 (6%)

Query: 12  RESTEEMVRRHAPLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAARNYATDRMASFET 71
           R + +EMV  +  LV  IA     R    +   DL+Q G IGL++A   +   R   F T
Sbjct: 373 RRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429

Query: 72  YAGIRIRGAM---LDELRKTDWTPRSVHRKLREVSEVVRQIENETGADATDAEVIRRLGI 128
           YA   IR A+   + +  +T   P  +   + +++ + RQ+  E G + T  E+  R+ +
Sbjct: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489

Query: 129 DAQEYHQILADAASARLLSLSAP-EDDEDGAALDVADQEGLG-PQDRFEQEGMRGALVEA 186
              +  ++L  A     +S+  P  DDED    D  +   L  P D    E +R A  + 
Sbjct: 490 PEDKIRKVLKIAKEP--ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547

Query: 187 IGGLPEREQLVMSLYYEQELN----LKEIGAVLGVTESRVCQIHGQALIRLR 234
           + GL  RE  V+ + +  ++N    L+E+G    VT  R+ QI  +AL +LR
Sbjct: 548 LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 599