Pairwise Alignments

Query, 186 a.a., sigma-70 family RNA polymerase sigma factor from Dyella japonica UNC79MFTsu3.2

Subject, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

 Score = 79.0 bits (193), Expect = 4e-20
 Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 15/161 (9%)

Query: 29  RHA--LLAFLRRRVSSEEDAQDIAQESLVRLI-RYREHAPESWSSLLYRIAINALNDR-- 83
           +HA  L  +L R+V   + A D+ QES +RL  +      ++    LYR A N L D   
Sbjct: 12  KHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLIDHIR 71

Query: 84  --ARRAQSHYQHDHIS-LDEHAHGLVSNDQDHDQRIANQQELARLQQALLGLPARCREIY 140
             ARR      H+ ++ +++   GL +      Q +A QQ  A L+QAL  LP R ++I+
Sbjct: 72  QEARRKTDAVPHEALAEIEDEVAGLEA------QAMAQQQRQA-LKQALAELPERTQQIF 124

Query: 141 LLNRIEGMSYPEIARHCGISVKAVEKNISRALALLRKKLCD 181
            LNRIEGM++ ++ARH  IS  +V+K++++ALA + ++L D
Sbjct: 125 RLNRIEGMTHAQVARHLDISDSSVQKHLAKALAYVMQRLQD 165